Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
Location | 1772240..1772807 | Replicon | chromosome |
Accession | NZ_CP090506 | ||
Organism | Xylella fastidiosa subsp. morus strain Riv19 |
Toxin (Protein)
Gene name | higB | Uniprot ID | - |
Locus tag | LZ757_RS08425 | Protein ID | WP_004085174.1 |
Coordinates | 1772240..1772521 (+) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | graA | Uniprot ID | - |
Locus tag | LZ757_RS08430 | Protein ID | WP_004085172.1 |
Coordinates | 1772532..1772807 (+) | Length | 92 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LZ757_RS08400 (LZ757_08400) | 1767418..1768596 | - | 1179 | WP_027700434.1 | phage tail sheath family protein | - |
LZ757_RS08405 (LZ757_08405) | 1768661..1770253 | - | 1593 | WP_040123119.1 | tail fiber domain-containing protein | - |
LZ757_RS08410 (LZ757_08410) | 1770261..1770818 | - | 558 | WP_027700436.1 | phage tail protein I | - |
LZ757_RS08415 (LZ757_08415) | 1770811..1771704 | - | 894 | WP_234056296.1 | baseplate J/gp47 family protein | - |
LZ757_RS08420 (LZ757_08420) | 1771704..1772027 | - | 324 | WP_228304176.1 | GPW/gp25 family protein | - |
LZ757_RS08425 (LZ757_08425) | 1772240..1772521 | + | 282 | WP_004085174.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
LZ757_RS08430 (LZ757_08430) | 1772532..1772807 | + | 276 | WP_004085172.1 | HigA family addiction module antitoxin | Antitoxin |
LZ757_RS08435 (LZ757_08435) | 1772895..1773197 | + | 303 | WP_038230541.1 | type II toxin-antitoxin system MqsR family toxin | - |
LZ757_RS08440 (LZ757_08440) | 1773200..1773601 | + | 402 | WP_004090697.1 | type II toxin-antitoxin system MqsA family antitoxin | - |
LZ757_RS08445 (LZ757_08445) | 1773670..1774257 | - | 588 | WP_040123117.1 | phage baseplate assembly protein V | - |
LZ757_RS08450 (LZ757_08450) | 1774254..1774796 | - | 543 | WP_038230164.1 | hypothetical protein | - |
LZ757_RS08455 (LZ757_08455) | 1774772..1775293 | - | 522 | WP_038230165.1 | hypothetical protein | - |
LZ757_RS08460 (LZ757_08460) | 1775290..1775613 | - | 324 | WP_027700441.1 | hypothetical protein | - |
LZ757_RS08465 (LZ757_08465) | 1775613..1775873 | - | 261 | WP_027700442.1 | hypothetical protein | - |
LZ757_RS08470 (LZ757_08470) | 1775891..1777765 | - | 1875 | WP_038230171.1 | phage major capsid protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 1752103..1802800 | 50697 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10610.17 Da Isoelectric Point: 9.8829
>T230932 WP_004085174.1 NZ_CP090506:1772240-1772521 [Xylella fastidiosa subsp. morus]
MIKSFRHKGIQQFFLVGSTAGIQTKHAAKLRIQLTALESAKRPEDMNAPGWKLHPLKGADLKGHWSIWVNGNYRLTFAFE
GEDAILVDYQDYH
MIKSFRHKGIQQFFLVGSTAGIQTKHAAKLRIQLTALESAKRPEDMNAPGWKLHPLKGADLKGHWSIWVNGNYRLTFAFE
GEDAILVDYQDYH
Download Length: 282 bp
>T230932 NZ_CP125721:c25280-25014 [Staphylococcus casei]
ATGGATAATTACAGTATTGCTATTAAAAATTCAGCAAAATCTGATTTAAAGAAAATTAAACAATCACAGTTGAAAACACA
ATTCTTAAAAATTGTAGACACGTTAAAAGAAGACCCTTATTTTCCGAGCCAATCTTTTGAAAAGTTGCAACCTAAACACT
TAGAGCGCTATTCAAGAAGAATAAACCATCAACATAGAGTTGTTTACACAGTTGATGAAGATGATAAGAACGTTTTTATC
CTTTCTGCATGGTCACATTATGAATAA
ATGGATAATTACAGTATTGCTATTAAAAATTCAGCAAAATCTGATTTAAAGAAAATTAAACAATCACAGTTGAAAACACA
ATTCTTAAAAATTGTAGACACGTTAAAAGAAGACCCTTATTTTCCGAGCCAATCTTTTGAAAAGTTGCAACCTAAACACT
TAGAGCGCTATTCAAGAAGAATAAACCATCAACATAGAGTTGTTTACACAGTTGATGAAGATGATAAGAACGTTTTTATC
CTTTCTGCATGGTCACATTATGAATAA
Antitoxin
Download Length: 92 a.a. Molecular weight: 10072.68 Da Isoelectric Point: 10.2184
>AT230932 WP_004085172.1 NZ_CP090506:1772532-1772807 [Xylella fastidiosa subsp. morus]
MKRMHNPAHPGEVLREYLGELTVTNAAAKLGVSRVALSRILNGTNGISADMALRLEDALGTSAEMWAAMQFKYDLWVASQ
QPRPKITRLHV
MKRMHNPAHPGEVLREYLGELTVTNAAAKLGVSRVALSRILNGTNGISADMALRLEDALGTSAEMWAAMQFKYDLWVASQ
QPRPKITRLHV
Download Length: 276 bp
>AT230932 NZ_CP125721:c25538-25281 [Staphylococcus casei]
ATGAATATTAAAACGCCTACCAATGCTAGAAAAGAATTCTATGAATTACTTAAACAAGTTAATGAGAGCCACGAACCCGT
TATTATAAGCAGTTCTAAGAGTGAAAATAACGCCGTAATCATAAGCCAAAAAGATTGGGATAGTATTCAAGAAACATTAT
ATCTTGAAACAACAGGTACTATGGATAAAGTACGAGAACGTGAAAAGGATAACAGTGGTTACGCTAATATTGATGATTTA
GACTGGGATAATCTCTAA
ATGAATATTAAAACGCCTACCAATGCTAGAAAAGAATTCTATGAATTACTTAAACAAGTTAATGAGAGCCACGAACCCGT
TATTATAAGCAGTTCTAAGAGTGAAAATAACGCCGTAATCATAAGCCAAAAAGATTGGGATAGTATTCAAGAAACATTAT
ATCTTGAAACAACAGGTACTATGGATAAAGTACGAGAACGTGAAAAGGATAACAGTGGTTACGCTAATATTGATGATTTA
GACTGGGATAATCTCTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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