Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-RelB |
| Location | 164354..164864 | Replicon | chromosome |
| Accession | NZ_CP090496 | ||
| Organism | Photobacterium damselae subsp. damselae strain AS-15-0759-2 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | A0A2T3QIJ8 |
| Locus tag | IHC89_RS15515 | Protein ID | WP_036765839.1 |
| Coordinates | 164604..164864 (+) | Length | 87 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | A0A2T3QIT0 |
| Locus tag | IHC89_RS15510 | Protein ID | WP_036765838.1 |
| Coordinates | 164354..164614 (+) | Length | 87 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHC89_RS15485 (IHC89_15485) | 159870..160646 | + | 777 | WP_237031935.1 | TPM domain-containing protein | - |
| IHC89_RS15490 (IHC89_15490) | 160649..161266 | + | 618 | WP_106341165.1 | TPM domain-containing protein | - |
| IHC89_RS15495 (IHC89_15495) | 161436..161663 | + | 228 | WP_036765835.1 | YgjV family protein | - |
| IHC89_RS15500 (IHC89_15500) | 161670..162404 | + | 735 | WP_115426448.1 | hypothetical protein | - |
| IHC89_RS15505 (IHC89_15505) | 162479..164161 | + | 1683 | WP_237032177.1 | RluA family pseudouridine synthase | - |
| IHC89_RS15510 (IHC89_15510) | 164354..164614 | + | 261 | WP_036765838.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| IHC89_RS15515 (IHC89_15515) | 164604..164864 | + | 261 | WP_036765839.1 | Txe/YoeB family addiction module toxin | Toxin |
| IHC89_RS15520 (IHC89_15520) | 164922..165176 | - | 255 | WP_069532913.1 | hypothetical protein | - |
| IHC89_RS15525 (IHC89_15525) | 165188..166072 | - | 885 | WP_112163568.1 | AraC family transcriptional regulator | - |
| IHC89_RS15530 (IHC89_15530) | 166232..167380 | + | 1149 | WP_237031936.1 | iron-containing alcohol dehydrogenase | - |
| IHC89_RS15535 (IHC89_15535) | 167565..168401 | + | 837 | WP_237031937.1 | HNH endonuclease signature motif containing protein | - |
| IHC89_RS15540 (IHC89_15540) | 168463..169365 | - | 903 | WP_237031938.1 | LysR family transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 87 a.a. Molecular weight: 10319.86 Da Isoelectric Point: 9.7118
>T230906 WP_036765839.1 NZ_CP090496:164604-164864 [Photobacterium damselae subsp. damselae]
MMINFTPNAWDDYLYWQSQDKKTLKRINKLIENCVRTPFEGIGKPEPLKDNLSGYWSRRIDDTHRLVYKATQDTLVIVAV
RFHYQK
MMINFTPNAWDDYLYWQSQDKKTLKRINKLIENCVRTPFEGIGKPEPLKDNLSGYWSRRIDDTHRLVYKATQDTLVIVAV
RFHYQK
Download Length: 261 bp
>T230906 NZ_CP125656:c1347830-1347339 [Xanthomonas campestris]
ATGACGGTATCGGCGCCGGAACCGCTGACAGCGCATCACCGGGTCGAACCGTTCGCATCGGGCGTGGAGAGCCTGGATCA
CTGGCTCAAGCGCCGCGCCCTGAAAAATCAGGCAACCGGTGCGTCACGGACCTTCGTTGCCTGCGAGGATGACCGCGTGG
TGGCCTATTACGCCCTGGCGTCGAGTGCGGTCGCCGTGGACGCGACGCCCGGCCGCTTCCGTCGCAACATGCCGGACCCG
ATCCCCGTGGTGGTGCTTGGGAGGCTTGCTGTTGACCAATCCCTGCATGGCAGAGGTTTTGGCCGCGCCCTGATGCAGGA
TGCTGGCAAGCGCATCCTGCATGCGGCCGACACCATCGGCATTCGCGGGCTGCTCGTGCATGCGCTCTCGGCGGACGCCA
AGGCGTTTTACGAGCGCATCGGCTTCGAACCTTCCCCGCTGGATCCCATGGTGCTGGCCGTCACGCTGGAAGACCTGAAA
GCCAGTCTGTGA
ATGACGGTATCGGCGCCGGAACCGCTGACAGCGCATCACCGGGTCGAACCGTTCGCATCGGGCGTGGAGAGCCTGGATCA
CTGGCTCAAGCGCCGCGCCCTGAAAAATCAGGCAACCGGTGCGTCACGGACCTTCGTTGCCTGCGAGGATGACCGCGTGG
TGGCCTATTACGCCCTGGCGTCGAGTGCGGTCGCCGTGGACGCGACGCCCGGCCGCTTCCGTCGCAACATGCCGGACCCG
ATCCCCGTGGTGGTGCTTGGGAGGCTTGCTGTTGACCAATCCCTGCATGGCAGAGGTTTTGGCCGCGCCCTGATGCAGGA
TGCTGGCAAGCGCATCCTGCATGCGGCCGACACCATCGGCATTCGCGGGCTGCTCGTGCATGCGCTCTCGGCGGACGCCA
AGGCGTTTTACGAGCGCATCGGCTTCGAACCTTCCCCGCTGGATCCCATGGTGCTGGCCGTCACGCTGGAAGACCTGAAA
GCCAGTCTGTGA
Antitoxin
Download Length: 87 a.a. Molecular weight: 9718.89 Da Isoelectric Point: 4.3167
>AT230906 WP_036765838.1 NZ_CP090496:164354-164614 [Photobacterium damselae subsp. damselae]
MTVLSFSEVRGNFKKVCDQVVDDCDAVVIHRRDADNVVLMSESEFNSWKETMYLMSNPVNAANLLESIKQAECGNVQTHE
LLSHDD
MTVLSFSEVRGNFKKVCDQVVDDCDAVVIHRRDADNVVLMSESEFNSWKETMYLMSNPVNAANLLESIKQAECGNVQTHE
LLSHDD
Download Length: 261 bp
>AT230906 NZ_CP125656:c1348117-1347827 [Xanthomonas campestris]
ATGTCCACACCCAACACTACGCCCGGCAAGCGCGAAACCTTGAATCTCCGCATCAAGCCGGAGGAGCGCAGCCTGATCGA
CCGGGCCGCCAAGGCGCGCGGGAAGAACCGCACCGATTTCATGCTGGACGCAGCGCGCTCGGCGGCCGAGGAAGCCTTGC
TGGACCAGACCCTCATCACGGCCAGCCCGGACGCCTACGCCGCCTTTTTGGCACGGCTGGACATGCCGCCGCAGCCGAAC
GCGCGCCTGCGCAAGACGATGCAGACGCCCGCTCCTTGGGAGAAGGCATGA
ATGTCCACACCCAACACTACGCCCGGCAAGCGCGAAACCTTGAATCTCCGCATCAAGCCGGAGGAGCGCAGCCTGATCGA
CCGGGCCGCCAAGGCGCGCGGGAAGAACCGCACCGATTTCATGCTGGACGCAGCGCGCTCGGCGGCCGAGGAAGCCTTGC
TGGACCAGACCCTCATCACGGCCAGCCCGGACGCCTACGCCGCCTTTTTGGCACGGCTGGACATGCCGCCGCAGCCGAAC
GCGCGCCTGCGCAAGACGATGCAGACGCCCGCTCCTTGGGAGAAGGCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2T3QIJ8 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2T3QIT0 |