Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/RelE-MqsA |
| Location | 795708..796347 | Replicon | chromosome |
| Accession | NZ_CP090365 | ||
| Organism | Photobacterium sp. TLY01 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | - |
| Locus tag | LN341_RS19205 | Protein ID | WP_234205241.1 |
| Coordinates | 795708..796046 (+) | Length | 113 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | LN341_RS19210 | Protein ID | WP_234205242.1 |
| Coordinates | 796033..796347 (+) | Length | 105 a.a. |
Genomic Context
Location: 792046..793131 (1086 bp)
Type: Others
Protein ID: WP_234205236.1
Type: Others
Protein ID: WP_234205236.1
Location: 793165..793938 (774 bp)
Type: Others
Protein ID: WP_046219895.1
Type: Others
Protein ID: WP_046219895.1
Location: 794801..795025 (225 bp)
Type: Others
Protein ID: WP_234205238.1
Type: Others
Protein ID: WP_234205238.1
Location: 795708..796046 (339 bp)
Type: Toxin
Protein ID: WP_234205241.1
Type: Toxin
Protein ID: WP_234205241.1
Location: 796033..796347 (315 bp)
Type: Antitoxin
Protein ID: WP_234205242.1
Type: Antitoxin
Protein ID: WP_234205242.1
Location: 796887..797849 (963 bp)
Type: Others
Protein ID: WP_234205245.1
Type: Others
Protein ID: WP_234205245.1
Location: 798416..799527 (1112 bp)
Type: Others
Protein ID: WP_234205030.1
Type: Others
Protein ID: WP_234205030.1
Location: 799687..800535 (849 bp)
Type: Others
Protein ID: WP_234205247.1
Type: Others
Protein ID: WP_234205247.1
Location: 790979..791863 (885 bp)
Type: Others
Protein ID: WP_234205233.1
Type: Others
Protein ID: WP_234205233.1
Location: 795074..795253 (180 bp)
Type: Others
Protein ID: Protein_708
Type: Others
Protein ID: Protein_708
Location: 795270..795535 (266 bp)
Type: Others
Protein ID: Protein_709
Type: Others
Protein ID: Protein_709
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN341_RS19175 (LN341_19175) | 790979..791863 | - | 885 | WP_234205233.1 | LysR substrate-binding domain-containing protein | - |
| LN341_RS19180 (LN341_19180) | 792046..793131 | + | 1086 | WP_234205236.1 | histidinol-phosphate transaminase | - |
| LN341_RS19185 (LN341_19185) | 793165..793938 | + | 774 | WP_046219895.1 | ABC transporter substrate-binding protein | - |
| LN341_RS19190 (LN341_19190) | 794801..795025 | + | 225 | WP_234205238.1 | maltose ABC transporter permease | - |
| LN341_RS19195 (LN341_19195) | 795074..795253 | - | 180 | Protein_708 | IS110 family transposase | - |
| LN341_RS19200 (LN341_19200) | 795270..795535 | - | 266 | Protein_709 | IS110 family transposase | - |
| LN341_RS19205 (LN341_19205) | 795708..796046 | + | 339 | WP_234205241.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LN341_RS19210 (LN341_19210) | 796033..796347 | + | 315 | WP_234205242.1 | DNA-binding transcriptional regulator | Antitoxin |
| LN341_RS19215 (LN341_19215) | 796887..797849 | + | 963 | WP_234205245.1 | GIY-YIG nuclease family protein | - |
| LN341_RS19220 (LN341_19220) | 798416..799527 | + | 1112 | WP_234205030.1 | IS3 family transposase | - |
| LN341_RS19225 (LN341_19225) | 799687..800535 | + | 849 | WP_234205247.1 | NAD(P)-dependent oxidoreductase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 113 a.a. Molecular weight: 13093.01 Da Isoelectric Point: 10.2003
>T230499 WP_234205241.1 NZ_CP090365:795708-796046 [Photobacterium sp. TLY01]
MKSVFVESTIFEKYRSDYLSDEEFRLFQAELMSNPKQGDVIQGTGGLRKIRVASKGKGKGKRGGSRVIYYFLDEKRRFYL
LTIYGKNEMSDLTVDQKKQLKAFMEAWRNEQS
MKSVFVESTIFEKYRSDYLSDEEFRLFQAELMSNPKQGDVIQGTGGLRKIRVASKGKGKGKRGGSRVIYYFLDEKRRFYL
LTIYGKNEMSDLTVDQKKQLKAFMEAWRNEQS
Download Length: 339 bp
>T230499 NZ_CP124911:2884269-2884412 [Enterococcus faecalis]
ATGAATGTAAGTACTAAAATCTATGAAAAGAGAGGCCTTTTGTCTATCGCAGAAGCTTTAGCTCTGATGATTAGTTTCGG
TTCTTTTATCGCAACGTTAATCTTCGGAATCCTAGAGGCTGTTAAAGAAGACAATAAAAAATAA
ATGAATGTAAGTACTAAAATCTATGAAAAGAGAGGCCTTTTGTCTATCGCAGAAGCTTTAGCTCTGATGATTAGTTTCGG
TTCTTTTATCGCAACGTTAATCTTCGGAATCCTAGAGGCTGTTAAAGAAGACAATAAAAAATAA
Antitoxin
Download Length: 105 a.a. Molecular weight: 11782.24 Da Isoelectric Point: 6.3297
>AT230499 WP_234205242.1 NZ_CP090365:796033-796347 [Photobacterium sp. TLY01]
MSNRDLFAELSSALVEAKEHSEGKVTLKTHQFNDISELNISPEEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSTP
NGQAVTLLKLVQRHPETLSHIAEL
MSNRDLFAELSSALVEAKEHSEGKVTLKTHQFNDISELNISPEEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSTP
NGQAVTLLKLVQRHPETLSHIAEL
Download Length: 315 bp
>AT230499 NZ_CP124911:c2884606-2884344 [Enterococcus faecalis]
AAATAAAAATGCCCGAGCCTCTTATTTTTCTAAGGCTCGGGCATTTTTATTGATGGTCTTTTGAGGGTCGTTGTGCTATA
ATGGTAATGAAAAGAGAGGTATGCGCCAACATACCTCTCTAGTGTAGAGCCGTTTCAGACGGTAGCGATTTTTAGTGATT
TATAAAAAATAACCGTGCTCGCTAAAGTTGACGGTTATTTTTTATTGTCTTCTTTAACAGCCTCTAGGATTCCGAAGATT
AACGTTGCGATAAAAGAACCGAA
AAATAAAAATGCCCGAGCCTCTTATTTTTCTAAGGCTCGGGCATTTTTATTGATGGTCTTTTGAGGGTCGTTGTGCTATA
ATGGTAATGAAAAGAGAGGTATGCGCCAACATACCTCTCTAGTGTAGAGCCGTTTCAGACGGTAGCGATTTTTAGTGATT
TATAAAAAATAACCGTGCTCGCTAAAGTTGACGGTTATTTTTTATTGTCTTCTTTAACAGCCTCTAGGATTCCGAAGATT
AACGTTGCGATAAAAGAACCGAA