Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | mqsRA (relBE)/MqsR-MqsA |
| Location | 1436612..1437368 | Replicon | chromosome |
| Accession | NC_010803 | ||
| Organism | Chlorobium limicola DSM 245 | ||
Toxin (Protein)
| Gene name | mqsR | Uniprot ID | B3ECX3 |
| Locus tag | CLIM_RS06670 | Protein ID | WP_012466275.1 |
| Coordinates | 1436612..1436920 (+) | Length | 103 a.a. |
Antitoxin (Protein)
| Gene name | mqsA | Uniprot ID | B3ECX4 |
| Locus tag | CLIM_RS06675 | Protein ID | WP_012466276.1 |
| Coordinates | 1436958..1437368 (+) | Length | 137 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLIM_RS06640 | 1431720..1431962 | + | 243 | WP_012466269.1 | ribbon-helix-helix domain-containing protein | - |
| CLIM_RS13010 | 1431947..1432150 | + | 204 | Protein_1284 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CLIM_RS06650 | 1432414..1432647 | - | 234 | WP_041465704.1 | hypothetical protein | - |
| CLIM_RS06655 | 1432816..1435365 | + | 2550 | WP_041465942.1 | aminopeptidase N | - |
| CLIM_RS06660 | 1435495..1435704 | + | 210 | WP_081429881.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CLIM_RS12725 | 1435745..1436098 | + | 354 | WP_150081611.1 | GNAT family N-acetyltransferase | - |
| CLIM_RS06670 | 1436612..1436920 | + | 309 | WP_012466275.1 | type II toxin-antitoxin system MqsR family toxin | Toxin |
| CLIM_RS06675 | 1436958..1437368 | + | 411 | WP_012466276.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin |
| CLIM_RS06680 | 1437546..1437806 | - | 261 | WP_012466277.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CLIM_RS06685 | 1437790..1438014 | - | 225 | WP_041465944.1 | ribbon-helix-helix protein, CopG family | - |
| CLIM_RS06695 | 1438462..1438731 | + | 270 | WP_012466280.1 | DUF4160 domain-containing protein | - |
| CLIM_RS06700 | 1438735..1438977 | + | 243 | WP_012466281.1 | DUF2442 domain-containing protein | - |
| CLIM_RS06705 | 1439081..1439350 | + | 270 | WP_041465706.1 | hypothetical protein | - |
| CLIM_RS06710 | 1439347..1439646 | + | 300 | WP_012466283.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CLIM_RS06715 | 1439785..1440120 | - | 336 | WP_041465707.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CLIM_RS06720 | 1440117..1440329 | - | 213 | WP_012466285.1 | antitoxin MazE family protein | - |
| CLIM_RS06725 | 1440927..1441169 | + | 243 | WP_012466286.1 | ribbon-helix-helix domain-containing protein | - |
| CLIM_RS06730 | 1441154..1441492 | + | 339 | WP_012466287.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CLIM_RS06735 | 1441537..1441785 | - | 249 | WP_012466288.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | - | 1423740..1471517 | 47777 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 a.a. Molecular weight: 11757.59 Da Isoelectric Point: 9.8050
>T22902 WP_012466275.1 NC_010803:1436612-1436920 [Chlorobium limicola DSM 245]
MEKRTPHYSLEKVKRIVSDRNSRPFTMTALSGGLALGLTEPVMREIVLALRRADFYKSMTTHLDHKLWQDVYHGMTPDGI
PVYIKVTDSDDDRPPVIQFKAR
MEKRTPHYSLEKVKRIVSDRNSRPFTMTALSGGLALGLTEPVMREIVLALRRADFYKSMTTHLDHKLWQDVYHGMTPDGI
PVYIKVTDSDDDRPPVIQFKAR
Download Length: 309 bp
>T22902 NC_010803:1436612-1436920 [Chlorobium limicola DSM 245]
ATGGAGAAAAGAACACCCCATTACAGTCTTGAAAAGGTTAAAAGAATAGTCTCCGACAGGAATTCACGCCCGTTCACCAT
GACGGCTTTGAGTGGCGGTTTGGCATTAGGCTTGACCGAACCTGTTATGCGCGAAATAGTGCTTGCGCTCCGAAGAGCTG
ATTTTTACAAGTCGATGACTACCCATCTTGACCATAAGCTCTGGCAGGACGTGTATCATGGAATGACGCCTGATGGAATT
CCGGTTTATATAAAAGTAACGGACTCTGACGATGACCGGCCACCGGTGATTCAGTTCAAGGCCAGATAA
ATGGAGAAAAGAACACCCCATTACAGTCTTGAAAAGGTTAAAAGAATAGTCTCCGACAGGAATTCACGCCCGTTCACCAT
GACGGCTTTGAGTGGCGGTTTGGCATTAGGCTTGACCGAACCTGTTATGCGCGAAATAGTGCTTGCGCTCCGAAGAGCTG
ATTTTTACAAGTCGATGACTACCCATCTTGACCATAAGCTCTGGCAGGACGTGTATCATGGAATGACGCCTGATGGAATT
CCGGTTTATATAAAAGTAACGGACTCTGACGATGACCGGCCACCGGTGATTCAGTTCAAGGCCAGATAA
Antitoxin
Download Length: 137 a.a. Molecular weight: 15407.83 Da Isoelectric Point: 8.4938
>AT22902 WP_012466276.1 NC_010803:1436958-1437368 [Chlorobium limicola DSM 245]
MIMNTTQCPSCGHKGMIDKVLEETLTYGGKSMTLHDMHGRFCPECGEGIWDEESYRRYTEAQEGLVRAIKGDPAADIRRI
RRKLKLTQAQLASSFGVGKVAFSRYERGESRPPAPLLKLLKLIDRHPDLLSEIEKM
MIMNTTQCPSCGHKGMIDKVLEETLTYGGKSMTLHDMHGRFCPECGEGIWDEESYRRYTEAQEGLVRAIKGDPAADIRRI
RRKLKLTQAQLASSFGVGKVAFSRYERGESRPPAPLLKLLKLIDRHPDLLSEIEKM
Download Length: 411 bp
>AT22902 NC_010803:1436958-1437368 [Chlorobium limicola DSM 245]
ATGATCATGAATACTACTCAATGTCCCTCATGCGGTCATAAAGGAATGATCGACAAGGTTTTGGAAGAAACGCTCACGTA
TGGGGGTAAATCGATGACGTTGCATGACATGCACGGCAGGTTCTGCCCTGAATGTGGAGAAGGAATATGGGATGAAGAGA
GTTACCGGCGCTATACGGAAGCTCAGGAGGGGCTGGTACGCGCGATCAAAGGCGACCCCGCAGCCGACATCCGACGCATC
CGCAGAAAGCTGAAGCTGACCCAGGCGCAGCTCGCCTCATCGTTCGGAGTCGGCAAAGTCGCGTTCTCGCGTTACGAGCG
TGGGGAAAGCAGGCCGCCTGCGCCGTTGCTCAAGTTGCTGAAACTCATTGACCGGCACCCCGATCTGCTGAGCGAAATCG
AAAAAATGTAA
ATGATCATGAATACTACTCAATGTCCCTCATGCGGTCATAAAGGAATGATCGACAAGGTTTTGGAAGAAACGCTCACGTA
TGGGGGTAAATCGATGACGTTGCATGACATGCACGGCAGGTTCTGCCCTGAATGTGGAGAAGGAATATGGGATGAAGAGA
GTTACCGGCGCTATACGGAAGCTCAGGAGGGGCTGGTACGCGCGATCAAAGGCGACCCCGCAGCCGACATCCGACGCATC
CGCAGAAAGCTGAAGCTGACCCAGGCGCAGCTCGCCTCATCGTTCGGAGTCGGCAAAGTCGCGTTCTCGCGTTACGAGCG
TGGGGAAAGCAGGCCGCCTGCGCCGTTGCTCAAGTTGCTGAAACTCATTGACCGGCACCCCGATCTGCTGAGCGAAATCG
AAAAAATGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|