Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | yonT-as-bsrE/- |
Location | 2187735..2187952 | Replicon | chromosome |
Accession | NZ_CP089148 | ||
Organism | Bacillus subtilis strain NIB353 |
Toxin (Protein)
Gene name | yonT | Uniprot ID | - |
Locus tag | LRO88_RS11860 | Protein ID | WP_019712271.1 |
Coordinates | 2187735..2187911 (-) | Length | 59 a.a. |
Antitoxin (RNA)
Gene name | as-bsrE | ||
Locus tag | - | ||
Coordinates | 2187852..2187952 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LRO88_RS11805 (2182827) | 2182827..2183051 | - | 225 | WP_231833899.1 | hypothetical protein | - |
LRO88_RS11810 (2183129) | 2183129..2183293 | - | 165 | WP_159376880.1 | hypothetical protein | - |
LRO88_RS11815 (2183330) | 2183330..2183689 | - | 360 | WP_159376881.1 | hypothetical protein | - |
LRO88_RS11820 (2183736) | 2183736..2183990 | - | 255 | WP_159376882.1 | hypothetical protein | - |
LRO88_RS11825 (2184033) | 2184033..2184254 | - | 222 | WP_159376883.1 | hypothetical protein | - |
LRO88_RS11830 (2184251) | 2184251..2184703 | - | 453 | WP_159376884.1 | hypothetical protein | - |
LRO88_RS11835 (2185033) | 2185033..2186250 | - | 1218 | WP_061891096.1 | hypothetical protein | - |
LRO88_RS11840 (2186269) | 2186269..2186736 | - | 468 | WP_231833900.1 | hypothetical protein | - |
LRO88_RS11845 (2186726) | 2186726..2187115 | - | 390 | WP_231833901.1 | GIY-YIG nuclease family protein | - |
LRO88_RS11850 (2187232) | 2187232..2187420 | - | 189 | WP_003230987.1 | hypothetical protein | - |
LRO88_RS11855 (2187465) | 2187465..2187716 | - | 252 | WP_159376885.1 | hypothetical protein | - |
LRO88_RS11860 (2187735) | 2187735..2187911 | - | 177 | WP_019712271.1 | hypothetical protein | Toxin |
- (2187852) | 2187852..2187952 | + | 101 | NuclAT_0 | - | Antitoxin |
- (2187852) | 2187852..2187952 | + | 101 | NuclAT_0 | - | Antitoxin |
- (2187852) | 2187852..2187952 | + | 101 | NuclAT_0 | - | Antitoxin |
- (2187852) | 2187852..2187952 | + | 101 | NuclAT_0 | - | Antitoxin |
LRO88_RS11865 (2188872) | 2188872..2189066 | + | 195 | WP_004399291.1 | hypothetical protein | - |
LRO88_RS11870 (2189106) | 2189106..2190980 | + | 1875 | Protein_2290 | DNA-directed RNA polymerase YonO | - |
LRO88_RS11875 (2191165) | 2191165..2192067 | + | 903 | WP_231833902.1 | NUMOD3 domain-containing DNA-binding protein | - |
LRO88_RS11880 (2192288) | 2192288..2192920 | + | 633 | WP_061891291.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 2118105..2249193 | 131088 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 59 a.a. Molecular weight: 6864.42 Da Isoelectric Point: 12.8833
>T227699 WP_019712271.1 NZ_CP089148:c2187911-2187735 [Bacillus subtilis]
VLEKVGIIVAFLISLTVLTINSLTIVEKVRNLKNGTSKKKKRIRKRLRPKRQRQRIRR
VLEKVGIIVAFLISLTVLTINSLTIVEKVRNLKNGTSKKKKRIRKRLRPKRQRQRIRR
Download Length: 177 bp
>T227699 NZ_CP123017:1349959-1350357 [Escherichia coli]
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACTATTAAGAATAAACCAGTACATGTCAGAGAGCGGTTTAA
CCTGAATTCTGGCCGGATGTGTATAAGTTCTGTAACATTGATGGAGCTTATCTATGGGGCAGAAAAAAGTCAGATGCCAG
AACGCAATTTGGCGGTTATTGAAGGTTTCGTATCTCGTTTGGTAGTGCTTGATTATGATAGTGCTGCTGCGACGCATACC
GGGCAAATCAGGGCCGAGCTTGCCCGGCAGGGAAGGCCTGTTGGACCTTTTGACCAGATGATAGCGGGACATGCTCGCAG
TCGCGGTTTGATTGTGGTTACCAACAATACCCGAGAGTTTGAGCGAGTGGCGGGAATCAGACTAGAAGACTGGAGCTAA
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACTATTAAGAATAAACCAGTACATGTCAGAGAGCGGTTTAA
CCTGAATTCTGGCCGGATGTGTATAAGTTCTGTAACATTGATGGAGCTTATCTATGGGGCAGAAAAAAGTCAGATGCCAG
AACGCAATTTGGCGGTTATTGAAGGTTTCGTATCTCGTTTGGTAGTGCTTGATTATGATAGTGCTGCTGCGACGCATACC
GGGCAAATCAGGGCCGAGCTTGCCCGGCAGGGAAGGCCTGTTGGACCTTTTGACCAGATGATAGCGGGACATGCTCGCAG
TCGCGGTTTGATTGTGGTTACCAACAATACCCGAGAGTTTGAGCGAGTGGCGGGAATCAGACTAGAAGACTGGAGCTAA
Antitoxin
Download Length: 101 bp
>AT227699 NZ_CP089148:2187852-2187952 [Bacillus subtilis]
GATTGTAAGAACCGTTAAAGATATGAGGAAAGCAACTATGATACCCACTTTCTCAAGCACTATGTACACCTCCTTTCCTA
TGACTCTATTATAACATAATT
GATTGTAAGAACCGTTAAAGATATGAGGAAAGCAACTATGATACCCACTTTCTCAAGCACTATGTACACCTCCTTTCCTA
TGACTCTATTATAACATAATT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|