Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type I Classification (family/domain) yonT-as-bsrE/-
Location 2187735..2187952 Replicon chromosome
Accession NZ_CP089148
Organism Bacillus subtilis strain NIB353

Toxin (Protein)


Gene name yonT Uniprot ID -
Locus tag LRO88_RS11860 Protein ID WP_019712271.1
Coordinates 2187735..2187911 (-) Length 59 a.a.

Antitoxin (RNA)


Gene name as-bsrE
Locus tag -
Coordinates 2187852..2187952 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LRO88_RS11805 (2182827) 2182827..2183051 - 225 WP_231833899.1 hypothetical protein -
LRO88_RS11810 (2183129) 2183129..2183293 - 165 WP_159376880.1 hypothetical protein -
LRO88_RS11815 (2183330) 2183330..2183689 - 360 WP_159376881.1 hypothetical protein -
LRO88_RS11820 (2183736) 2183736..2183990 - 255 WP_159376882.1 hypothetical protein -
LRO88_RS11825 (2184033) 2184033..2184254 - 222 WP_159376883.1 hypothetical protein -
LRO88_RS11830 (2184251) 2184251..2184703 - 453 WP_159376884.1 hypothetical protein -
LRO88_RS11835 (2185033) 2185033..2186250 - 1218 WP_061891096.1 hypothetical protein -
LRO88_RS11840 (2186269) 2186269..2186736 - 468 WP_231833900.1 hypothetical protein -
LRO88_RS11845 (2186726) 2186726..2187115 - 390 WP_231833901.1 GIY-YIG nuclease family protein -
LRO88_RS11850 (2187232) 2187232..2187420 - 189 WP_003230987.1 hypothetical protein -
LRO88_RS11855 (2187465) 2187465..2187716 - 252 WP_159376885.1 hypothetical protein -
LRO88_RS11860 (2187735) 2187735..2187911 - 177 WP_019712271.1 hypothetical protein Toxin
- (2187852) 2187852..2187952 + 101 NuclAT_0 - Antitoxin
- (2187852) 2187852..2187952 + 101 NuclAT_0 - Antitoxin
- (2187852) 2187852..2187952 + 101 NuclAT_0 - Antitoxin
- (2187852) 2187852..2187952 + 101 NuclAT_0 - Antitoxin
LRO88_RS11865 (2188872) 2188872..2189066 + 195 WP_004399291.1 hypothetical protein -
LRO88_RS11870 (2189106) 2189106..2190980 + 1875 Protein_2290 DNA-directed RNA polymerase YonO -
LRO88_RS11875 (2191165) 2191165..2192067 + 903 WP_231833902.1 NUMOD3 domain-containing DNA-binding protein -
LRO88_RS11880 (2192288) 2192288..2192920 + 633 WP_061891291.1 hypothetical protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 2118105..2249193 131088


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin


No domain identified.



Sequences


Toxin        


Download         Length: 59 a.a.        Molecular weight: 6864.42 Da        Isoelectric Point: 12.8833

>T227699 WP_019712271.1 NZ_CP089148:c2187911-2187735 [Bacillus subtilis]
VLEKVGIIVAFLISLTVLTINSLTIVEKVRNLKNGTSKKKKRIRKRLRPKRQRQRIRR

Download         Length: 177 bp

>T227699 NZ_CP123017:1349959-1350357 [Escherichia coli]
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACTATTAAGAATAAACCAGTACATGTCAGAGAGCGGTTTAA
CCTGAATTCTGGCCGGATGTGTATAAGTTCTGTAACATTGATGGAGCTTATCTATGGGGCAGAAAAAAGTCAGATGCCAG
AACGCAATTTGGCGGTTATTGAAGGTTTCGTATCTCGTTTGGTAGTGCTTGATTATGATAGTGCTGCTGCGACGCATACC
GGGCAAATCAGGGCCGAGCTTGCCCGGCAGGGAAGGCCTGTTGGACCTTTTGACCAGATGATAGCGGGACATGCTCGCAG
TCGCGGTTTGATTGTGGTTACCAACAATACCCGAGAGTTTGAGCGAGTGGCGGGAATCAGACTAGAAGACTGGAGCTAA

Antitoxin


Download         Length: 101 bp

>AT227699 NZ_CP089148:2187852-2187952 [Bacillus subtilis]
GATTGTAAGAACCGTTAAAGATATGAGGAAAGCAACTATGATACCCACTTTCTCAAGCACTATGTACACCTCCTTTCCTA
TGACTCTATTATAACATAATT

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Download structure file

References