Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | txpA-ratA/- |
Location | 2543633..2543904 | Replicon | chromosome |
Accession | NZ_CP088198 | ||
Organism | Enterococcus faecalis strain S11-6 |
Toxin (Protein)
Gene name | txpA | Uniprot ID | - |
Locus tag | LQ046_RS11925 | Protein ID | WP_002375510.1 |
Coordinates | 2543752..2543904 (-) | Length | 51 a.a. |
Antitoxin (RNA)
Gene name | ratA | ||
Locus tag | - | ||
Coordinates | 2543633..2543819 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LQ046_RS11910 (2539600) | 2539600..2542344 | + | 2745 | WP_104807179.1 | glycosyl hydrolase family 65 protein | - |
LQ046_RS11915 (2542359) | 2542359..2543009 | + | 651 | WP_002375514.1 | beta-phosphoglucomutase | - |
- (2543078) | 2543078..2543210 | + | 133 | NuclAT_12 | - | - |
- (2543257) | 2543257..2543444 | + | 188 | NuclAT_4 | - | - |
LQ046_RS11920 (2543377) | 2543377..2543481 | - | 105 | WP_023894767.1 | putative holin-like toxin | - |
- (2543633) | 2543633..2543778 | + | 146 | NuclAT_11 | - | - |
- (2543633) | 2543633..2543819 | + | 187 | NuclAT_5 | - | Antitoxin |
LQ046_RS11925 (2543752) | 2543752..2543904 | - | 153 | WP_002375510.1 | type I toxin-antitoxin system toxin PepG1 | Toxin |
LQ046_RS11930 (2544129) | 2544129..2545100 | - | 972 | WP_002381060.1 | ribose-phosphate diphosphokinase | - |
LQ046_RS11935 (2545275) | 2545275..2545712 | - | 438 | WP_002354871.1 | peptide-methionine (R)-S-oxide reductase MsrB | - |
LQ046_RS11940 (2545845) | 2545845..2546399 | - | 555 | WP_002354869.1 | Maf family protein | - |
LQ046_RS11945 (2546424) | 2546424..2548556 | - | 2133 | WP_002375508.1 | DNA mismatch repair endonuclease MutL | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 51 a.a. Molecular weight: 5637.90 Da Isoelectric Point: 11.0942
>T226913 WP_002375510.1 NZ_CP088198:c2543904-2543752 [Enterococcus faecalis]
VVRMSALPKFTERRGLLSAYETIQTILGFGMFTIALIALIVKLLKNDKKK
VVRMSALPKFTERRGLLSAYETIQTILGFGMFTIALIALIVKLLKNDKKK
Download Length: 153 bp
>T226913 NZ_CP122652:c4819594-4819283 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGACCGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTGTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGACCGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTGTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA
Antitoxin
Download Length: 187 bp
>AT226913 NZ_CP088198:2543633-2543819 [Enterococcus faecalis]
TGTGCTATAATGAAAATGAAAAGAGAGATATGAGTCAACATACCTCTCTAGTGTAGAGCCGTTTGAGACGGTGACCGATT
GTATTATTTAAAAATAACCGTACTGGTCAAAGTAGACGGTTATTTTTTTTTGTCATTTTTAAGCAATTTCACAATCAGTG
CAATCAAAGCAATGGTAAACATACCAA
TGTGCTATAATGAAAATGAAAAGAGAGATATGAGTCAACATACCTCTCTAGTGTAGAGCCGTTTGAGACGGTGACCGATT
GTATTATTTAAAAATAACCGTACTGGTCAAAGTAGACGGTTATTTTTTTTTGTCATTTTTAAGCAATTTCACAATCAGTG
CAATCAAAGCAATGGTAAACATACCAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|