Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-VapI |
| Location | 2312977..2313558 | Replicon | chromosome |
| Accession | NZ_CP087694 | ||
| Organism | Xylella taiwanensis strain PLS433 | ||
Toxin (Protein)
| Gene name | graT | Uniprot ID | Z9JLS9 |
| Locus tag | LPH46_RS09580 | Protein ID | WP_038270683.1 |
| Coordinates | 2312977..2313255 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | LPH46_RS09585 | Protein ID | WP_081755408.1 |
| Coordinates | 2313259..2313558 (+) | Length | 100 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH46_RS09545 (LPH46_09545) | 2308258..2309304 | + | 1047 | WP_038270717.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| LPH46_RS09550 (LPH46_09550) | 2309991..2310587 | - | 597 | WP_162814073.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| LPH46_RS09555 (LPH46_09555) | 2310775..2310855 | - | 81 | Protein_1882 | tail protein X | - |
| LPH46_RS09560 (LPH46_09560) | 2310852..2311106 | - | 255 | WP_230428278.1 | phage tail protein | - |
| LPH46_RS09565 (LPH46_09565) | 2311179..2311661 | - | 483 | Protein_1884 | phage tail protein I | - |
| LPH46_RS09570 (LPH46_09570) | 2311654..2312547 | - | 894 | WP_038270682.1 | baseplate J/gp47 family protein | - |
| LPH46_RS09575 (LPH46_09575) | 2312547..2312876 | - | 330 | WP_230428175.1 | GPW/gp25 family protein | - |
| LPH46_RS09580 (LPH46_09580) | 2312977..2313255 | + | 279 | WP_038270683.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LPH46_RS09585 (LPH46_09585) | 2313259..2313558 | + | 300 | WP_081755408.1 | HigA family addiction module antitoxin | Antitoxin |
| LPH46_RS09590 (LPH46_09590) | 2313568..2313864 | - | 297 | WP_230428176.1 | phage baseplate assembly protein V | - |
| LPH46_RS09595 (LPH46_09595) | 2313818..2314027 | - | 210 | WP_230428177.1 | phage baseplate assembly protein V | - |
| LPH46_RS09600 (LPH46_09600) | 2314027..2314680 | - | 654 | WP_230428178.1 | hypothetical protein | - |
| LPH46_RS09605 (LPH46_09605) | 2314656..2315072 | - | 417 | WP_230428499.1 | hypothetical protein | - |
| LPH46_RS09610 (LPH46_09610) | 2315195..2315488 | - | 294 | WP_038270685.1 | hypothetical protein | - |
| LPH46_RS09615 (LPH46_09615) | 2315469..2315699 | - | 231 | WP_230428500.1 | hypothetical protein | - |
| LPH46_RS09620 (LPH46_09620) | 2315826..2316074 | - | 249 | WP_038270686.1 | hypothetical protein | - |
| LPH46_RS09625 (LPH46_09625) | 2316113..2317497 | - | 1385 | Protein_1896 | phage major capsid protein | - |
| LPH46_RS09630 (LPH46_09630) | 2317596..2318045 | - | 450 | WP_230428180.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2308210..2334829 | 26619 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10669.11 Da Isoelectric Point: 9.0910
>T226043 WP_038270683.1 NZ_CP087694:2312977-2313255 [Xylella taiwanensis]
MIKTFADQDTESLFNGSRVRRFIHIEAVARRKLIQLHAAATLSFLNAPPGNRLETLKGDRQGQHSIRINNQFRLCFIWEN
GDAYQVEIVDYH
MIKTFADQDTESLFNGSRVRRFIHIEAVARRKLIQLHAAATLSFLNAPPGNRLETLKGDRQGQHSIRINNQFRLCFIWEN
GDAYQVEIVDYH
Download Length: 279 bp
>T226043 NZ_CP121700:1035066-1035479 [Methylobacterium indicum]
GTGAAGCCTCGCTACCTGCTCGATACGAACGTCATCATCGCGCTCCGGCGCAGGCGGCCACGCTCGGTCGTCGCTCGGTT
GACTGCACTCCGCATCGGCGAAGCCGTCATGTCGCCCGTGACTTACGGGGAGCTGTGCTTTGGGGCGGAGAAGAGCGTGG
ATCGGGACAATGCCTTCGCGGTCCTCGCCCGGCTGGTCGCCGTCGTTCCGATCGAGATCCCCGAGCCTGGGGAAACCGGC
CGCCGCTATGGTGAAATCCGGGCCACGCTCGGACGACAGGGGCAGTTGATCGGCAACAACGATGTCTGGATCGCCGCGCA
TGCGCTCGCGGCGAACCTCACGCTCGTGACCGGCAATGTCGGTGAGTTCAGCCGCGTGCCCGGTCTCGTCATCGAGGATT
GGACGGCCCATTGA
GTGAAGCCTCGCTACCTGCTCGATACGAACGTCATCATCGCGCTCCGGCGCAGGCGGCCACGCTCGGTCGTCGCTCGGTT
GACTGCACTCCGCATCGGCGAAGCCGTCATGTCGCCCGTGACTTACGGGGAGCTGTGCTTTGGGGCGGAGAAGAGCGTGG
ATCGGGACAATGCCTTCGCGGTCCTCGCCCGGCTGGTCGCCGTCGTTCCGATCGAGATCCCCGAGCCTGGGGAAACCGGC
CGCCGCTATGGTGAAATCCGGGCCACGCTCGGACGACAGGGGCAGTTGATCGGCAACAACGATGTCTGGATCGCCGCGCA
TGCGCTCGCGGCGAACCTCACGCTCGTGACCGGCAATGTCGGTGAGTTCAGCCGCGTGCCCGGTCTCGTCATCGAGGATT
GGACGGCCCATTGA
Antitoxin
Download Length: 100 a.a. Molecular weight: 10980.69 Da Isoelectric Point: 9.0879
>AT226043 WP_081755408.1 NZ_CP087694:2313259-2313558 [Xylella taiwanensis]
MSMSKTLPPIHPGEILREEFMAPLGLSSNALAKAIGVTAARINEIVRERRGITADTALRLARYFGTDPQSWLNLEQHYAL
ECAKRDLGEALSRIHPRVA
MSMSKTLPPIHPGEILREEFMAPLGLSSNALAKAIGVTAARINEIVRERRGITADTALRLARYFGTDPQSWLNLEQHYAL
ECAKRDLGEALSRIHPRVA
Download Length: 300 bp
>AT226043 NZ_CP121700:1034842-1035069 [Methylobacterium indicum]
ATGACTGTCGCCAAGCTTTTCATGTCCGGAGGCAGCCAAGCCGTCAGACTGCCGCGAGAATTCCGCTTCGACGGCAGCGA
GGTCGAGATTTTTCGCCGTGGCGACGAAGTCGTCCTGCGCGAGCGCCCGGCCAATCTCTCCGTGCTCCTCGACATCATCG
ACGACATGCCCGCCGACATGCTGACCGATCTGCATGATGGCCCGCCGCAGGAGCGCGAGGGCCTGTGA
ATGACTGTCGCCAAGCTTTTCATGTCCGGAGGCAGCCAAGCCGTCAGACTGCCGCGAGAATTCCGCTTCGACGGCAGCGA
GGTCGAGATTTTTCGCCGTGGCGACGAAGTCGTCCTGCGCGAGCGCCCGGCCAATCTCTCCGTGCTCCTCGACATCATCG
ACGACATGCCCGCCGACATGCTGACCGATCTGCATGATGGCCCGCCGCAGGAGCGCGAGGGCCTGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|