Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
Location | 1168103..1168752 | Replicon | chromosome |
Accession | NZ_CP087280 | ||
Organism | Leclercia adecarboxylata strain SH19PE29 |
Toxin (Protein)
Gene name | higB | Uniprot ID | - |
Locus tag | LO739_RS05515 | Protein ID | WP_230431256.1 |
Coordinates | 1168390..1168752 (-) | Length | 121 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | LO739_RS05510 | Protein ID | WP_059308573.1 |
Coordinates | 1168103..1168402 (-) | Length | 100 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LO739_RS05500 (LO739_05500) | 1164499..1166472 | + | 1974 | WP_230431255.1 | PhoX family phosphatase | - |
LO739_RS05505 (LO739_05505) | 1166576..1167961 | + | 1386 | WP_059308574.1 | phenylalanine transporter | - |
LO739_RS05510 (LO739_05510) | 1168103..1168402 | - | 300 | WP_059308573.1 | helix-turn-helix transcriptional regulator | Antitoxin |
LO739_RS05515 (LO739_05515) | 1168390..1168752 | - | 363 | WP_230431256.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
LO739_RS05520 (LO739_05520) | 1169029..1170270 | + | 1242 | WP_032616942.1 | MFS transporter | - |
LO739_RS05525 (LO739_05525) | 1170282..1171307 | + | 1026 | WP_117385899.1 | sugar phosphate isomerase/epimerase | - |
LO739_RS05530 (LO739_05530) | 1171300..1172442 | + | 1143 | WP_230431257.1 | Gfo/Idh/MocA family oxidoreductase | - |
LO739_RS05535 (LO739_05535) | 1172518..1173498 | + | 981 | WP_191153075.1 | LacI family DNA-binding transcriptional regulator | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 121 a.a. Molecular weight: 13958.86 Da Isoelectric Point: 6.4838
>T225197 WP_230431256.1 NZ_CP087280:c1168752-1168390 [Leclercia adecarboxylata]
MWEVETTDTFDKWFNHQSQALKEDVLAIMHILSEYGPQLGRPWVDTVKNSHYANMKELRIQHAGDPVRAFFAFDPGRKAI
ILCAGNKTGKNEKRFYKDMITMADAEFSDYLASKEAEWLR
MWEVETTDTFDKWFNHQSQALKEDVLAIMHILSEYGPQLGRPWVDTVKNSHYANMKELRIQHAGDPVRAFFAFDPGRKAI
ILCAGNKTGKNEKRFYKDMITMADAEFSDYLASKEAEWLR
Download Length: 363 bp
>T225197 NZ_CP121071:c49046-48630 [Salmonella enterica subsp. enterica serovar Infantis]
GTGAAGAAAATGTATATGCTCGACACGAACATCTGCTCGTTCATCATGCGCGAGCAGCCCGAAGCGGTGCTGAAGCGCCT
GGAGCAGGCGGTGCTGCGCGGCCACCGTATTGTGGTCTCGGCCATCACCTACTCAGAGATGCGCTTCGGCGCCACCGGCC
CGAAGGCCTCGCCGCGTCACATTGAACTGGTTGACGCGTTCTGCGCCCGCCTCGATGCTATCCTGCCCTGGGACCGGGCC
GCGGTGAACGCCACCACGGAGATTAAGGTGGCGCTACGCCTCGCCGGGACGCCGATCGGCCCGAACGACACGGCGATCGC
CGGGCACGCTATTGCCGCCGGCGCGGTACTGGTGACAAATAATACGCGGGAGTTTGAGCGGGTGCCGGGTCTTGTTCTGG
AAGACTGGGGAAGATAA
GTGAAGAAAATGTATATGCTCGACACGAACATCTGCTCGTTCATCATGCGCGAGCAGCCCGAAGCGGTGCTGAAGCGCCT
GGAGCAGGCGGTGCTGCGCGGCCACCGTATTGTGGTCTCGGCCATCACCTACTCAGAGATGCGCTTCGGCGCCACCGGCC
CGAAGGCCTCGCCGCGTCACATTGAACTGGTTGACGCGTTCTGCGCCCGCCTCGATGCTATCCTGCCCTGGGACCGGGCC
GCGGTGAACGCCACCACGGAGATTAAGGTGGCGCTACGCCTCGCCGGGACGCCGATCGGCCCGAACGACACGGCGATCGC
CGGGCACGCTATTGCCGCCGGCGCGGTACTGGTGACAAATAATACGCGGGAGTTTGAGCGGGTGCCGGGTCTTGTTCTGG
AAGACTGGGGAAGATAA
Antitoxin
Download Length: 100 a.a. Molecular weight: 10972.68 Da Isoelectric Point: 5.8526
>AT225197 WP_059308573.1 NZ_CP087280:c1168402-1168103 [Leclercia adecarboxylata]
MATLKELMAQQSQESQERIAAKVEDLRIIVALNQLREELNISQTELAAAMGVKQPTVAKIEQPDNDPRLSTLKRYVTALG
GEVSIDVILPTGKRVAFHF
MATLKELMAQQSQESQERIAAKVEDLRIIVALNQLREELNISQTELAAAMGVKQPTVAKIEQPDNDPRLSTLKRYVTALG
GEVSIDVILPTGKRVAFHF
Download Length: 300 bp
>AT225197 NZ_CP121071:c49273-49043 [Salmonella enterica subsp. enterica serovar Infantis]
ATGAGAACCGTATCTATTTTTAAAAACGGCAACAACCGCGCCATCCGCCTTCCCCGCGATCTGGATTTTGATGGAGTGAG
CGAGCTGGAAATCGTCCGGGAAGGGGACAGCATCATCCTGCGCCCTGTCCGGCCGACCTGGGGCTCGTTCGCGCAGCTCG
AAAAAGCTGACCCGGGCTTTATGGCGGAGCGTGAGGACGTTGTCAGCGACGAAGGACGATTTAACCTGTGA
ATGAGAACCGTATCTATTTTTAAAAACGGCAACAACCGCGCCATCCGCCTTCCCCGCGATCTGGATTTTGATGGAGTGAG
CGAGCTGGAAATCGTCCGGGAAGGGGACAGCATCATCCTGCGCCCTGTCCGGCCGACCTGGGGCTCGTTCGCGCAGCTCG
AAAAAGCTGACCCGGGCTTTATGGCGGAGCGTGAGGACGTTGTCAGCGACGAAGGACGATTTAACCTGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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