Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/- |
| Location | 1162838..1163493 | Replicon | chromosome |
| Accession | NZ_CP087204 | ||
| Organism | Pseudomonas sp. B21-054 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | - |
| Locus tag | LOY70_RS04980 | Protein ID | WP_092223719.1 |
| Coordinates | 1162838..1163182 (+) | Length | 115 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | LOY70_RS04985 | Protein ID | WP_123342704.1 |
| Coordinates | 1163179..1163493 (+) | Length | 105 a.a. |
Genomic Context
Location: 1157851..1158798 (948 bp)
Type: Others
Protein ID: WP_025211924.1
Type: Others
Protein ID: WP_025211924.1
Location: 1158802..1160832 (2031 bp)
Type: Others
Protein ID: WP_123415447.1
Type: Others
Protein ID: WP_123415447.1
Location: 1160836..1161462 (627 bp)
Type: Others
Protein ID: WP_025211926.1
Type: Others
Protein ID: WP_025211926.1
Location: 1161463..1161798 (336 bp)
Type: Others
Protein ID: WP_025211927.1
Type: Others
Protein ID: WP_025211927.1
Location: 1161810..1162697 (888 bp)
Type: Others
Protein ID: WP_025211928.1
Type: Others
Protein ID: WP_025211928.1
Location: 1162838..1163182 (345 bp)
Type: Toxin
Protein ID: WP_092223719.1
Type: Toxin
Protein ID: WP_092223719.1
Location: 1163179..1163493 (315 bp)
Type: Antitoxin
Protein ID: WP_123342704.1
Type: Antitoxin
Protein ID: WP_123342704.1
Location: 1163684..1164388 (705 bp)
Type: Others
Protein ID: WP_265033853.1
Type: Others
Protein ID: WP_265033853.1
Location: 1164528..1165271 (744 bp)
Type: Others
Protein ID: WP_265033855.1
Type: Others
Protein ID: WP_265033855.1
Location: 1165364..1166377 (1014 bp)
Type: Others
Protein ID: WP_265033857.1
Type: Others
Protein ID: WP_265033857.1
Location: 1166507..1167424 (918 bp)
Type: Others
Protein ID: WP_265033859.1
Type: Others
Protein ID: WP_265033859.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY70_RS04955 (LOY70_04950) | 1157851..1158798 | + | 948 | WP_025211924.1 | ubiquinol oxidase subunit II | - |
| LOY70_RS04960 (LOY70_04955) | 1158802..1160832 | + | 2031 | WP_123415447.1 | cytochrome o ubiquinol oxidase subunit I | - |
| LOY70_RS04965 (LOY70_04960) | 1160836..1161462 | + | 627 | WP_025211926.1 | cytochrome o ubiquinol oxidase subunit III | - |
| LOY70_RS04970 (LOY70_04965) | 1161463..1161798 | + | 336 | WP_025211927.1 | cytochrome o ubiquinol oxidase subunit IV | - |
| LOY70_RS04975 (LOY70_04970) | 1161810..1162697 | + | 888 | WP_025211928.1 | heme o synthase | - |
| LOY70_RS04980 (LOY70_04975) | 1162838..1163182 | + | 345 | WP_092223719.1 | toxin | Toxin |
| LOY70_RS04985 (LOY70_04980) | 1163179..1163493 | + | 315 | WP_123342704.1 | helix-turn-helix domain-containing protein | Antitoxin |
| LOY70_RS04990 (LOY70_04985) | 1163684..1164388 | - | 705 | WP_265033853.1 | hypothetical protein | - |
| LOY70_RS04995 (LOY70_04990) | 1164528..1165271 | - | 744 | WP_265033855.1 | DUF72 domain-containing protein | - |
| LOY70_RS05000 (LOY70_04995) | 1165364..1166377 | - | 1014 | WP_265033857.1 | sensor domain-containing diguanylate cyclase | - |
| LOY70_RS05005 (LOY70_05000) | 1166507..1167424 | - | 918 | WP_265033859.1 | LysR family transcriptional regulator | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 115 a.a. Molecular weight: 13709.71 Da Isoelectric Point: 9.2887
>T225134 WP_092223719.1 NZ_CP087204:1162838-1163182 [Pseudomonas sp. B21-054]
MRTLFFETTTFTATVGHYLTDDEYRLLQSYMLQHPEVGDVMPRTGGFRKLRWFDERRGKGKRGGLRVIYYWLMNDRQFWM
FAIYDKDELENLTSEQEKTLKRAIEAELKVRGTL
MRTLFFETTTFTATVGHYLTDDEYRLLQSYMLQHPEVGDVMPRTGGFRKLRWFDERRGKGKRGGLRVIYYWLMNDRQFWM
FAIYDKDELENLTSEQEKTLKRAIEAELKVRGTL
Download Length: 345 bp
>T225134 NZ_CP121003:825262-825675 [Salmonella enterica]
GTGGTCCTGTGGCAATCTGATTTACGCGTCTCATGGCGCGCTCAGTGGATCTCATTGCTCATTCATGGGCTGGTTGCCGC
GGTGATTTTATTGATGCCCTGGCCGCTGAGTTATACCCCGTTATGGATGATACTACTGTCGCTGGTCGTGTTTGACTGTG
TACGTAGCCAGCGCAGGATTAATACCTGCCAGGGAGAGATCAAGCTACTCATGGACGGGCGCTTACGCTGGCAGGGGCAG
GACTGGACGCTCTTGCGTCCGCCCTGGTTACTGAAGAGCGGGATGGTGTTGCGTTTACGCGCAGAGTCTGGACGTCATCA
GCATTTATGGCTGGCGGCGGATAGCATGGAAGAAGCGGAATGGCGTGAGTTGCGTCGGATACTGTTACAGCAGCCGATAT
CAGGCCAACACTAA
GTGGTCCTGTGGCAATCTGATTTACGCGTCTCATGGCGCGCTCAGTGGATCTCATTGCTCATTCATGGGCTGGTTGCCGC
GGTGATTTTATTGATGCCCTGGCCGCTGAGTTATACCCCGTTATGGATGATACTACTGTCGCTGGTCGTGTTTGACTGTG
TACGTAGCCAGCGCAGGATTAATACCTGCCAGGGAGAGATCAAGCTACTCATGGACGGGCGCTTACGCTGGCAGGGGCAG
GACTGGACGCTCTTGCGTCCGCCCTGGTTACTGAAGAGCGGGATGGTGTTGCGTTTACGCGCAGAGTCTGGACGTCATCA
GCATTTATGGCTGGCGGCGGATAGCATGGAAGAAGCGGAATGGCGTGAGTTGCGTCGGATACTGTTACAGCAGCCGATAT
CAGGCCAACACTAA
Antitoxin
Download Length: 105 a.a. Molecular weight: 11718.70 Da Isoelectric Point: 10.2441
>AT225134 WP_123342704.1 NZ_CP087204:1163179-1163493 [Pseudomonas sp. B21-054]
MKKRDLFAEMMQGVGEMAAQREGKITLRQISIEDKPVPEVSAQEIVALRDKLHMSQAVFAKSIRTSPGTLRNWEQEKSKP
NAQAALLIRLVEKFPDMVERLGAV
MKKRDLFAEMMQGVGEMAAQREGKITLRQISIEDKPVPEVSAQEIVALRDKLHMSQAVFAKSIRTSPGTLRNWEQEKSKP
NAQAALLIRLVEKFPDMVERLGAV
Download Length: 315 bp
>AT225134 NZ_CP121003:825015-825281 [Salmonella enterica]
ATGGATATTCACAATAAAGCACGTATTCACTGGGCATGTCGTCGCGGTATGCGCGAACTTGATATTTCCATCATGCCGTT
TTTTGAACATGAGTACGATAGTTTAAGTGATGAAGAAAAGCGTATTTTTGTCCGTTTGTTGCAGAGTGACGACCCGGATT
TATTTAACTGGTTAATGAATCACGGTAAACCGGCTGACGCTGAACTGGAACAGATGGTCCGACTCATTCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA
ATGGATATTCACAATAAAGCACGTATTCACTGGGCATGTCGTCGCGGTATGCGCGAACTTGATATTTCCATCATGCCGTT
TTTTGAACATGAGTACGATAGTTTAAGTGATGAAGAAAAGCGTATTTTTGTCCGTTTGTTGCAGAGTGACGACCCGGATT
TATTTAACTGGTTAATGAATCACGGTAAACCGGCTGACGCTGAACTGGAACAGATGGTCCGACTCATTCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA