224847

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 3226257..3226984 Replicon chromosome
Accession NZ_CP087136
Organism Escherichia coli strain JW5503

Toxin (Protein)


Gene name higB Uniprot ID U9ZMR4
Locus tag LOX89_RS15755 Protein ID WP_000550189.1
Coordinates 3226670..3226984 (-) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag LOX89_RS15750 Protein ID WP_000560266.1
Coordinates 3226257..3226673 (-) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LOX89_RS15740 (3221417) 3221417..3223768 + 2352 WP_000695487.1 alpha-glucosidase -
LOX89_RS15745 (3224194) 3224194..3226212 + 2019 WP_000121433.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
LOX89_RS15750 (3226257) 3226257..3226673 - 417 WP_000560266.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
LOX89_RS15755 (3226670) 3226670..3226984 - 315 WP_000550189.1 type II toxin-antitoxin system toxin HigB Toxin
LOX89_RS15760 (3227268) 3227268..3228404 - 1137 WP_000018695.1 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG -
LOX89_RS15765 (3228489) 3228489..3228992 + 504 WP_001333820.1 M48 family metallopeptidase -
LOX89_RS15770 (3229069) 3229069..3229761 + 693 WP_000942548.1 vancomycin high temperature exclusion protein -
LOX89_RS15775 (3229840) 3229840..3230826 + 987 WP_000617698.1 Gfo/Idh/MocA family oxidoreductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(20-92)

Antitoxin

Cro/C1-type helix-turn-helix domain

(84-135)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12103.10 Da        Isoelectric Point: 10.0409

>T224847 WP_000550189.1 NZ_CP087136:c3226984-3226670 [Escherichia coli]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Download         Length: 315 bp

>T224847 NZ_CP120564:c59328-59179 [Escherichia coli]
ATGACGAAATATGCCCTTATCGGGTTGCTCGCCGTGTGCGCCACGGTGTTGTGTTTTTCACTGATATTCAGGGAACGGTT
ATGTGAGCTGAATATTCACAGAGGAAATACAGTGGTGCAGGTAACTCTGGCCTACGAAGCGCGGAAGTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 14995.42 Da        Isoelectric Point: 4.4547

>AT224847 WP_000560266.1 NZ_CP087136:c3226673-3226257 [Escherichia coli]
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID

Download         Length: 417 bp

>AT224847 NZ_CP120564:59372-59433 [Escherichia coli]
TTAAGGTACTTCATGCAGACCTCACGAGTTAATGGATTAACGAGTGGGGTCTTCGCATTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6KMQ
PDB 5IFG
PDB 5YCL
PDB 6KML

Antitoxin

Source ID Structure

References