Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 3998525..3999027 | Replicon | chromosome |
| Accession | NZ_CP086678 | ||
| Organism | Escherichia coli strain EFF60 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | U9YDH0 |
| Locus tag | LMF34_RS19020 | Protein ID | WP_000767829.1 |
| Coordinates | 3998773..3999027 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | S1Q063 |
| Locus tag | LMF34_RS19015 | Protein ID | WP_001259255.1 |
| Coordinates | 3998525..3998776 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMF34_RS18990 (3993703) | 3993703..3994770 | - | 1068 | WP_000080093.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
| LMF34_RS18995 (3994770) | 3994770..3995840 | - | 1071 | WP_000108943.1 | histidinol-phosphate transaminase | - |
| LMF34_RS19000 (3995837) | 3995837..3997141 | - | 1305 | WP_248422871.1 | histidinol dehydrogenase | - |
| LMF34_RS19005 (3997147) | 3997147..3998046 | - | 900 | WP_000131789.1 | ATP phosphoribosyltransferase | - |
| LMF34_RS19010 (3998192) | 3998192..3998242 | - | 51 | WP_071593552.1 | his operon leader peptide | - |
| LMF34_RS19015 (3998525) | 3998525..3998776 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
| LMF34_RS19020 (3998773) | 3998773..3999027 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
| LMF34_RS19025 (3999110) | 3999110..3999934 | + | 825 | WP_000754737.1 | SDR family oxidoreductase | - |
| LMF34_RS19030 (3999980) | 3999980..4000909 | + | 930 | WP_000803351.1 | LysR substrate-binding domain-containing protein | - |
| LMF34_RS19035 (4001124) | 4001124..4001186 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
| LMF34_RS19040 (4001176) | 4001176..4002534 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| LMF34_RS19045 (4002713) | 4002713..4003771 | + | 1059 | WP_000492321.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| LMF34_RS19050 (4003785) | 4003785..4004012 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
>T224355 WP_000767829.1 NZ_CP086678:3998773-3999027 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
Download Length: 255 bp
>T224355 NZ_CP120216:53007-53300 [Agrobacterium leguminum]
GTGAAGCTTACTTGGTCGGCGTTTGCGCTATCGGATCGCGACGCCATCTTCACGTATATTGAGGCAGATAATCCTGCGGC
CGCTATTCTCATCGATGAGCGGATAGTATCCGCCGCCCGTCGCTTGCTCGACTTTCCTGCCAGTGGGCGCTTGGGTAGAA
TCGCCGGTACACGCGAACTCGTCATCAATGGTACACCTTACGTCGCCGCCTACGCCACTACCGAGACGACAGTTCGAATT
CTTCGCGTACTCCATGGCGCGCAGGAATGGCCAGAATATCTGCTGCAAAACTGA
GTGAAGCTTACTTGGTCGGCGTTTGCGCTATCGGATCGCGACGCCATCTTCACGTATATTGAGGCAGATAATCCTGCGGC
CGCTATTCTCATCGATGAGCGGATAGTATCCGCCGCCCGTCGCTTGCTCGACTTTCCTGCCAGTGGGCGCTTGGGTAGAA
TCGCCGGTACACGCGAACTCGTCATCAATGGTACACCTTACGTCGCCGCCTACGCCACTACCGAGACGACAGTTCGAATT
CTTCGCGTACTCCATGGCGCGCAGGAATGGCCAGAATATCTGCTGCAAAACTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
>AT224355 WP_001259255.1 NZ_CP086678:3998525-3998776 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
Download Length: 252 bp
>AT224355 NZ_CP120216:52702-53010 [Agrobacterium leguminum]
ATGGCTGCAAACGCTCTTGTCCAAACACGCATTGATGCCGAAGTTCGGGATCGGGCTTCGGCCGTGCTTGAAAGCATGGG
GCTCACGGTATCTGATGCGGTTCGTATTATGCTCACCCGGACTGCTAACGAAGGGGCGCTACCTCTTGAACTTCTTTCTG
GGAGTGAAACACACGATGCCTGGTTTCGGACCAAGGTGCTCGAAGCGTTAAATGATACTCGGTCGGATTTAACAGACGAC
GAGGCCGAGGCGCACTTTGCCAAACGCCGAGCGGCGGCCCGCCTTAAAGTGGGTTCGACAGAATCGTGA
ATGGCTGCAAACGCTCTTGTCCAAACACGCATTGATGCCGAAGTTCGGGATCGGGCTTCGGCCGTGCTTGAAAGCATGGG
GCTCACGGTATCTGATGCGGTTCGTATTATGCTCACCCGGACTGCTAACGAAGGGGCGCTACCTCTTGAACTTCTTTCTG
GGAGTGAAACACACGATGCCTGGTTTCGGACCAAGGTGCTCGAAGCGTTAAATGATACTCGGTCGGATTTAACAGACGAC
GAGGCCGAGGCGCACTTTGCCAAACGCCGAGCGGCGGCCCGCCTTAAAGTGGGTTCGACAGAATCGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|