Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 675859..676658 Replicon chromosome
Accession NZ_CP086625
Organism Escherichia coli strain RIVM_C037166

Toxin (Protein)


Gene name yhaV Uniprot ID F0JQM9
Locus tag LN360_RS03280 Protein ID WP_000347270.1
Coordinates 675859..676323 (-) Length 155 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID A0A0V9H1L4
Locus tag LN360_RS03285 Protein ID WP_001551693.1
Coordinates 676323..676658 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LN360_RS03250 (670860) 670860..671294 - 435 WP_000948837.1 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA -
LN360_RS03255 (671312) 671312..672190 - 879 WP_001295548.1 PTS N-acetylgalactosamine transporter subunit IID -
LN360_RS03260 (672180) 672180..672959 - 780 WP_000406214.1 PTS N-acetylgalactosamine transporter subunit IIC -
LN360_RS03265 (672970) 672970..673443 - 474 WP_001295547.1 PTS N-acetylgalactosamine transporter subunit IIB -
LN360_RS03270 (673466) 673466..674746 - 1281 WP_001551694.1 tagatose-bisphosphate aldolase subunit KbaZ -
LN360_RS03275 (674995) 674995..675804 + 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
LN360_RS03280 (675859) 675859..676323 - 465 WP_000347270.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin
LN360_RS03285 (676323) 676323..676658 - 336 WP_001551693.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin
LN360_RS03290 (676807) 676807..678378 - 1572 WP_001273738.1 galactarate dehydratase -
LN360_RS03295 (678753) 678753..680087 + 1335 WP_000599651.1 galactarate/glucarate/glycerate transporter GarP -
LN360_RS03300 (680103) 680103..680873 + 771 WP_001551692.1 2-dehydro-3-deoxyglucarate aldolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(14-110)


Sequences

Toxin        


Download         Length: 155 a.a.        Molecular weight: 17806.22 Da        Isoelectric Point: 9.6924

>T224199 WP_000347270.1 NZ_CP086625:c676323-675859 [Escherichia coli]
MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKN
KDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWETLTRETEEAH

Download         Length: 465 bp

>T224199 NZ_CP119746:2830047-2830154 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGACTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGGATTATTACCGCAGCGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12347.87 Da        Isoelectric Point: 4.6890

>AT224199 WP_001551693.1 NZ_CP086625:c676658-676323 [Escherichia coli]
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNN
PQKTRPFDTQQGKKLVAGMDVNIDDEIGDDE

Download         Length: 336 bp

>AT224199 NZ_CP119746:c2829999-2829932 [Escherichia coli]
GTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTAAACCTCTCAACGTGCGGGGGTTTTCTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0V9NQ90

Antitoxin

Source ID Structure
AlphaFold DB A0A0V9H1L4

References