Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | mqsRA (relBE)/MqsR-MqsA |
| Location | 767284..767977 | Replicon | chromosome |
| Accession | NZ_CP086538 | ||
| Organism | Escherichia coli strain Ec-042-T5-MAC | ||
Toxin (Protein)
| Gene name | mqsR | Uniprot ID | U9ZN09 |
| Locus tag | LNN52_RS03745 | Protein ID | WP_000415585.1 |
| Coordinates | 767284..767580 (+) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | mqsA | Uniprot ID | S1EBV2 |
| Locus tag | LNN52_RS03750 | Protein ID | WP_000650107.1 |
| Coordinates | 767582..767977 (+) | Length | 132 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNN52_RS03710 (762418) | 762418..762897 | + | 480 | WP_000065332.1 | Hcp family type VI secretion system effector | - |
| LNN52_RS03715 (762900) | 762900..763610 | + | 711 | WP_000834030.1 | hypothetical protein | - |
| LNN52_RS03720 (763617) | 763617..763949 | + | 333 | WP_000914690.1 | DUF2645 family protein | - |
| LNN52_RS03725 (763995) | 763995..765344 | - | 1350 | WP_000673358.1 | quorum sensing histidine kinase QseC | - |
| LNN52_RS03730 (765341) | 765341..766000 | - | 660 | WP_001221502.1 | quorum sensing response regulator transcription factor QseB | - |
| LNN52_RS03735 (766152) | 766152..766544 | + | 393 | WP_000712658.1 | OB fold stress tolerance protein YgiW | - |
| LNN52_RS03740 (766597) | 766597..767079 | + | 483 | WP_000183505.1 | GyrI-like domain-containing protein | - |
| LNN52_RS03745 (767284) | 767284..767580 | + | 297 | WP_000415585.1 | type II toxin-antitoxin system toxin MqsR | Toxin |
| LNN52_RS03750 (767582) | 767582..767977 | + | 396 | WP_000650107.1 | type II toxin-antitoxin system antitoxin MqsA | Antitoxin |
| LNN52_RS03755 (768110) | 768110..769717 | + | 1608 | WP_001375094.1 | ABC transporter substrate-binding protein | - |
| LNN52_RS03760 (769855) | 769855..772113 | + | 2259 | WP_001281841.1 | DNA topoisomerase IV subunit A | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11261.99 Da Isoelectric Point: 8.9070
>T223743 WP_000415585.1 NZ_CP086538:767284-767580 [Escherichia coli]
MEKRTPHTRLSQVKKLVNTGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTTYSDHTIWQDVYRPRLVTGQV
YLKITVIHDVLIVSFKEK
MEKRTPHTRLSQVKKLVNTGQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTTYSDHTIWQDVYRPRLVTGQV
YLKITVIHDVLIVSFKEK
Download Length: 297 bp
>T223743 NZ_CP119172:c1463352-1462576 [Streptococcus macedonicus]
ATGAGATTGGAAGAATTTAGTGAGGCTGAGTTTCAGAAGGCCTTGCAGCGAACCATTCGGGCTTTAACCCGAGGCAAAAC
GATTCCAGAACAACCAAAAGCCATCTTGCTTGGCGGGCAAAGCGGAGCAGGTAAGACGACTATTCATCGTATCAAGCAAA
AAGAATTTCAAGGCAATATCATTATCATCGATGGTGATAGCTACCGTTCTCAGCATCCCAATTATTTAGCCCTGCAAGAA
AAGTATGGCAAGGACAGCGTGGACTATACCAAGGGATTTGCAGGAAAAATGGTAGAACATCTGGTTGACGAGCTCAGCAC
GCAGGGTTATCACTTGCTGATTGAGGGAACCTTGCGAACTACTCAAGTTCCTCGTAAGACTGCTCAATTACTCCGTTCTA
AAGGCTACCAAGTTTCCTTAGCTGTGATTGGCACCAAACCAGAGCTTTCTTATCTCAGCACCTTGATTCGTTACGAAGAA
CTTTATGCCATCAATCCCAATCAGGCCAGAGCAACCCCAAAAAAACACCATGATGGGATTGTAGAGAACTTGGTTGATAA
CCTAAAGGAGCTCGAAAGCGATAAACTCTTTGACCAAATTCAGATTTATCAAAGAGATAGAACTTGTATCTACGATTCTG
AAACTGATGAAGGCTCCGCGGCAGAAGTGCTACAAGAATGCCTCTTTGGAAAATGGAGCAAGATAGAGGAGGAGATGCTG
AGGGTGGGAGAAGGACGGATGAGGGAGATGAGTAAAAGTAATGGAAAAGATGCATAG
ATGAGATTGGAAGAATTTAGTGAGGCTGAGTTTCAGAAGGCCTTGCAGCGAACCATTCGGGCTTTAACCCGAGGCAAAAC
GATTCCAGAACAACCAAAAGCCATCTTGCTTGGCGGGCAAAGCGGAGCAGGTAAGACGACTATTCATCGTATCAAGCAAA
AAGAATTTCAAGGCAATATCATTATCATCGATGGTGATAGCTACCGTTCTCAGCATCCCAATTATTTAGCCCTGCAAGAA
AAGTATGGCAAGGACAGCGTGGACTATACCAAGGGATTTGCAGGAAAAATGGTAGAACATCTGGTTGACGAGCTCAGCAC
GCAGGGTTATCACTTGCTGATTGAGGGAACCTTGCGAACTACTCAAGTTCCTCGTAAGACTGCTCAATTACTCCGTTCTA
AAGGCTACCAAGTTTCCTTAGCTGTGATTGGCACCAAACCAGAGCTTTCTTATCTCAGCACCTTGATTCGTTACGAAGAA
CTTTATGCCATCAATCCCAATCAGGCCAGAGCAACCCCAAAAAAACACCATGATGGGATTGTAGAGAACTTGGTTGATAA
CCTAAAGGAGCTCGAAAGCGATAAACTCTTTGACCAAATTCAGATTTATCAAAGAGATAGAACTTGTATCTACGATTCTG
AAACTGATGAAGGCTCCGCGGCAGAAGTGCTACAAGAATGCCTCTTTGGAAAATGGAGCAAGATAGAGGAGGAGATGCTG
AGGGTGGGAGAAGGACGGATGAGGGAGATGAGTAAAAGTAATGGAAAAGATGCATAG
Antitoxin
Download Length: 132 a.a. Molecular weight: 14703.10 Da Isoelectric Point: 9.2136
>AT223743 WP_000650107.1 NZ_CP086538:767582-767977 [Escherichia coli]
MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRKK
LSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVLDKHPELLNEIR
MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRKK
LSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVLDKHPELLNEIR
Download Length: 396 bp
>AT223743 NZ_CP119172:c1463828-1463352 [Streptococcus macedonicus]
ATGATCGGAGACAATATAAAATCACTACGCCGAACACACGATTTAACACAGCCAGAATTTGCGAAAATGGTTGGAATTTC
CCGCAATAGCCTGAGTCGCTATGAAAATGGAACCAGTAAAGTTTCAACAGAACTCATTGACTGTATTTGTCAGAAATTTA
ATGTTTCTTATGTTGATATTGTCGGGGAGGACAAGATGCTAACACCTGTTGAAGATTACCAATTGACCTTAAAAATCGAG
ATCATTAAAGAACGTGGAGCAGCCATTTTATCAAAGCTTTATAGATACCAAGATAGTCAAGATATTGCTTTTGATGATGA
ATCGAATCCGTGGATTCTCATGAGTGATGACTTGGCCGAATTGATTAACACGAAAATTTATCTTGTCGATACTTTCGATG
AAATAGAGCGTTACAATGGCTATTTAGATGGTATTGAGCGGATGTTAGACATGGTGCATCATCGGGTGCTGGCATAA
ATGATCGGAGACAATATAAAATCACTACGCCGAACACACGATTTAACACAGCCAGAATTTGCGAAAATGGTTGGAATTTC
CCGCAATAGCCTGAGTCGCTATGAAAATGGAACCAGTAAAGTTTCAACAGAACTCATTGACTGTATTTGTCAGAAATTTA
ATGTTTCTTATGTTGATATTGTCGGGGAGGACAAGATGCTAACACCTGTTGAAGATTACCAATTGACCTTAAAAATCGAG
ATCATTAAAGAACGTGGAGCAGCCATTTTATCAAAGCTTTATAGATACCAAGATAGTCAAGATATTGCTTTTGATGATGA
ATCGAATCCGTGGATTCTCATGAGTGATGACTTGGCCGAATTGATTAACACGAAAATTTATCTTGTCGATACTTTCGATG
AAATAGAGCGTTACAATGGCTATTTAGATGGTATTGAGCGGATGTTAGACATGGTGCATCATCGGGTGCTGGCATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|