Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 353223..353869 Replicon chromosome
Accession NZ_CP086128
Organism Klebsiella pneumoniae strain MIN-109

Toxin (Protein)


Gene name higB Uniprot ID A0A483JFR4
Locus tag LLZ91_RS01620 Protein ID WP_004188313.1
Coordinates 353223..353570 (+) Length 116 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID A0A483GM64
Locus tag LLZ91_RS01625 Protein ID WP_004188315.1
Coordinates 353570..353869 (+) Length 100 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LLZ91_RS01610 (LLZ91_01610) 349149..350582 + 1434 WP_002920564.1 glycogen synthase GlgA -
LLZ91_RS01615 (LLZ91_01615) 350600..353047 + 2448 WP_002920561.1 glycogen phosphorylase -
LLZ91_RS01620 (LLZ91_01620) 353223..353570 + 348 WP_004188313.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
LLZ91_RS01625 (LLZ91_01625) 353570..353869 + 300 WP_004188315.1 XRE family transcriptional regulator Antitoxin
LLZ91_RS01630 (LLZ91_01630) 353932..355440 - 1509 WP_002920554.1 glycerol-3-phosphate dehydrogenase -
LLZ91_RS01635 (LLZ91_01635) 355645..355974 + 330 WP_002920552.1 thiosulfate sulfurtransferase GlpE -
LLZ91_RS01640 (LLZ91_01640) 356025..356855 + 831 WP_004188317.1 rhomboid family intramembrane serine protease GlpG -
LLZ91_RS01645 (LLZ91_01645) 356905..357663 + 759 WP_002920548.1 DeoR/GlpR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(13-107)

Antitoxin

Cro/C1-type helix-turn-helix domain

(31-78)


Sequences

Toxin        


Download         Length: 116 a.a.        Molecular weight: 13548.57 Da        Isoelectric Point: 6.2327

>T222582 WP_004188313.1 NZ_CP086128:353223-353570 [Klebsiella pneumoniae]
MWDVETTDTFDTWFELQSRALKEDMLATMLILSEFAPQLGRPYVDTVKDSTFQNMKELRVQHHGLPIRAFFAFDPLRKAI
VLCAGNKDGMNEKRFYKEMITLADREFSQHLTKER

Download         Length: 348 bp

>T222582 NZ_CP117967:44015-44281 [Veillonella rogosae]
ATGGCTTATAAACTTGAATTTTCTAAACGGTTTGACAAGCAATTTTCTAAATTAGATAAATCAACGCAACGCTATCTTTT
TAATTGGCTTATAAAGAATGTAGATAATGTAGAAAATCCTAGATACTCAGGAAAATCATTGACGGGGAATAAAACAGGGC
TGTGGCGTTATCGCATTGGTAATCATAGAGTTATTGCTGATATTAATGGCTATAGATGCATCATTTTAGCGCTAGAAGTT
GGTCATCGAAAAGACATTTACAAATAG

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 10873.64 Da        Isoelectric Point: 10.1464

>AT222582 WP_004188315.1 NZ_CP086128:353570-353869 [Klebsiella pneumoniae]
MATLKELMAKQSPDSQQRIAAKAAEIRQSVALNLLREELQMSQTEMAAAMGVKQPTIAKMEQADNDPRLSTLKRYIAAWG
GELSINVTLPTGKKVSFNL

Download         Length: 300 bp

>AT222582 NZ_CP117967:43804-44025 [Veillonella rogosae]
ATGGCGAATATTTCAGTCCGTCTAAATGAACAAGAAGAAGAGTTATTTAAAACCTATGCTGAGTTTATGGATGAAACACT
TTCTACCCTCTTTAAGAAGGCTTTGCTAGAAAAGATTGAAGACGAATTTGATCTTAAGGTAGGTCAAAAAGCATTAGCAG
AATACGAGCAAGATCCAGTTACCTATTCTGTGGCGGAAATGCGTGCAAAATATGGCTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A483JFR4

Antitoxin

Source ID Structure
AlphaFold DB A0A483GM64

References