Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | yonT-SR6/- |
Location | 2270575..2270904 | Replicon | chromosome |
Accession | NZ_CP086061 | ||
Organism | Bacillus sp. BC1-43 |
Toxin (Protein)
Gene name | yonT | Uniprot ID | - |
Locus tag | LK685_RS12135 | Protein ID | WP_229762365.1 |
Coordinates | 2270575..2270826 (-) | Length | 84 a.a. |
Antitoxin (RNA)
Gene name | SR6 | ||
Locus tag | - | ||
Coordinates | 2270804..2270904 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LK685_RS12085 | 2265612..2266049 | - | 438 | WP_161476927.1 | hypothetical protein | - |
LK685_RS12090 | 2266132..2266521 | - | 390 | WP_202616987.1 | UPF0715 family protein | - |
LK685_RS12095 | 2266604..2266990 | - | 387 | WP_229762359.1 | hypothetical protein | - |
LK685_RS12100 | 2266971..2267333 | - | 363 | WP_229762360.1 | hypothetical protein | - |
LK685_RS12105 | 2267371..2267730 | - | 360 | WP_213410304.1 | hypothetical protein | - |
LK685_RS12110 | 2267777..2268031 | - | 255 | WP_229762361.1 | hypothetical protein | - |
LK685_RS12115 | 2268069..2268290 | - | 222 | WP_229762362.1 | hypothetical protein | - |
LK685_RS12120 | 2268287..2268739 | - | 453 | WP_229762363.1 | hypothetical protein | - |
LK685_RS12125 | 2269067..2270284 | - | 1218 | WP_229762364.1 | hypothetical protein | - |
LK685_RS12130 | 2270372..2270530 | - | 159 | WP_069684683.1 | hypothetical protein | - |
LK685_RS12135 | 2270575..2270826 | - | 252 | WP_229762365.1 | hypothetical protein | Toxin |
- | 2270804..2270904 | + | 101 | - | - | Antitoxin |
LK685_RS12140 | 2270845..2271021 | - | 177 | WP_017696861.1 | hypothetical protein | - |
- | 2270962..2271062 | + | 101 | NuclAT_0 | - | - |
- | 2270962..2271062 | + | 101 | NuclAT_0 | - | - |
- | 2270962..2271062 | + | 101 | NuclAT_0 | - | - |
- | 2270962..2271062 | + | 101 | NuclAT_0 | - | - |
LK685_RS12145 | 2271896..2273470 | - | 1575 | WP_229762366.1 | hypothetical protein | - |
LK685_RS12150 | 2273700..2273879 | + | 180 | WP_229762367.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 2184888..2341692 | 156804 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 84 a.a. Molecular weight: 9986.97 Da Isoelectric Point: 10.0301
>T222455 WP_229762365.1 NZ_CP086061:c2270826-2270575 [Bacillus sp. BC1-43]
MNFSFSSYPYYNMIKHIANMKRFSLWFTHITFIGLFLMFQLIKDYFSSEGKALINTIFVVTCIIAILLWIIYFVFLNLRN
KSH
MNFSFSSYPYYNMIKHIANMKRFSLWFTHITFIGLFLMFQLIKDYFSSEGKALINTIFVVTCIIAILLWIIYFVFLNLRN
KSH
Download Length: 252 bp
>T222455 NZ_CP117862:21583-21762 [Komagataeibacter oboediens]
ATGAAAAGTGCCGATCTGATCCGGGAGCTGGAAAAAGCAGGCTGGAAGCTGGATCGCGTGCGCGGTTCACACAACGTCTT
CAAACATCCGTCGCGACCAGGGATCGTGGTCGTCCCTCATCCCAAAAAGGATCTGGGCACCGGTCTGGTTGCCGCCATCC
GCAAACAGGCGGGTCTCTAG
ATGAAAAGTGCCGATCTGATCCGGGAGCTGGAAAAAGCAGGCTGGAAGCTGGATCGCGTGCGCGGTTCACACAACGTCTT
CAAACATCCGTCGCGACCAGGGATCGTGGTCGTCCCTCATCCCAAAAAGGATCTGGGCACCGGTCTGGTTGCCGCCATCC
GCAAACAGGCGGGTCTCTAG
Antitoxin
Download Length: 101 bp
>AT222455 NZ_CP086061:2270804-2270904 [Bacillus sp. BC1-43]
TAGGAACTAAAGGAGAAGTTCATTCCCCTTTAGCTTAGCTCTCATCGGCGTATACGTTGGCGTTGTCTCTTTGGTCGGAG
CCGCTTGCGTATACGCTTTTT
TAGGAACTAAAGGAGAAGTTCATTCCCCTTTAGCTTAGCTCTCATCGGCGTATACGTTGGCGTTGTCTCTTTGGTCGGAG
CCGCTTGCGTATACGCTTTTT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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