Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) higBA (relBE)/Gp49-HTH_37
Location 2211618..2212486 Replicon chromosome
Accession NC_009525
Organism Mycobacterium tuberculosis H37Ra

Toxin (Protein)


Gene name higB Uniprot ID P9WJA4
Locus tag MRA_RS10330 Protein ID WP_010886136.1
Coordinates 2211618..2211995 (+) Length 126 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID G0TLM0
Locus tag MRA_RS10335 Protein ID WP_003409886.1
Coordinates 2212037..2212486 (+) Length 150 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
MRA_RS10280 2207407..2207859 - 453 WP_003899095.1 lipoprotein -
MRA_RS10285 2207923..2208324 + 402 WP_003409869.1 hypothetical protein -
MRA_RS10290 2208317..2208499 - 183 WP_003409870.1 hypothetical protein -
MRA_RS10295 2208613..2208963 - 351 WP_003899096.1 hypothetical protein -
MRA_RS10300 2208974..2209876 - 903 WP_003899097.1 hypothetical protein -
MRA_RS10305 2209897..2210088 - 192 WP_003409876.1 hypothetical protein -
MRA_RS10310 2210089..2210385 - 297 WP_003409877.1 hypothetical protein -
MRA_RS10315 2210625..2210840 + 216 WP_003409878.1 antitoxin -
MRA_RS10320 2210837..2211148 + 312 WP_003409881.1 type II toxin-antitoxin system VapC family toxin -
MRA_RS22705 2211122..2211643 - 522 WP_003904745.1 hypothetical protein -
MRA_RS10330 2211618..2211995 + 378 WP_010886136.1 type II toxin-antitoxin system toxin HigB Toxin
MRA_RS10335 2212037..2212486 + 450 WP_003409886.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
MRA_RS10340 2212483..2213028 + 546 WP_003409891.1 SecB-like chaperone -
MRA_RS10345 2212917..2213531 - 615 WP_003901296.1 hypothetical protein -
MRA_RS10350 2213580..2213876 - 297 WP_003409896.1 type II toxin-antitoxin system RelE/ParE family toxin -
MRA_RS10355 2213873..2214124 - 252 WP_003409899.1 type II toxin-antitoxin system ParD family antitoxin -
MRA_RS10360 2214111..2214605 + 495 WP_003899099.1 hypothetical protein -
MRA_RS10365 2214765..2215172 - 408 WP_003409913.1 type II toxin-antitoxin system VapC family toxin -
MRA_RS10370 2215176..2215448 - 273 WP_003899100.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
MRA_RS10375 2215481..2216701 - 1221 WP_003409919.1 TetR family transcriptional regulator Mce3R -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(27-113)

Antitoxin

(44-91)


Sequences


Toxin        


Download         Length: 126 a.a.        Molecular weight: 14397.77 Da        Isoelectric Point: 10.8862

>T22164 WP_010886136.1 NC_009525:2211618-2211995 [Mycobacterium tuberculosis H37Ra]
VPPPDPAAMGTWKFFRASVDGRPVFKKEFDKLPDQARAALIVLMQRYLVGDLAAGSIKPIRGDILELRWHEANNHFRVLF
FRWGQHPVALTAFYKNQQKTPKTKIETALDRQKIWKRAFGDTPPI

Download         Length: 378 bp

>T22164 NC_009525:2211618-2211995 [Mycobacterium tuberculosis H37Ra]
GTGCCGCCCCCTGATCCAGCCGCCATGGGTACCTGGAAGTTCTTCCGGGCATCTGTGGATGGCCGGCCGGTATTCAAGAA
GGAGTTCGACAAGCTTCCTGATCAGGCCCGGGCCGCGCTGATCGTGCTAATGCAGCGGTATCTCGTCGGCGACCTCGCCG
CAGGGAGCATCAAACCGATTCGTGGCGACATTCTGGAGTTGCGATGGCATGAGGCGAACAACCACTTCCGGGTACTGTTC
TTCCGCTGGGGCCAGCATCCCGTAGCGCTGACAGCGTTCTACAAGAACCAGCAGAAGACTCCCAAGACGAAGATCGAGAC
GGCCCTGGACCGGCAGAAAATCTGGAAAAGAGCCTTCGGCGACACCCCACCGATCTGA

Antitoxin


Download         Length: 150 a.a.        Molecular weight: 16760.16 Da        Isoelectric Point: 8.0771

>AT22164 WP_003409886.1 NC_009525:2212037-2212486 [Mycobacterium tuberculosis H37Ra]
MSIDFPLGDDLAGYIAEAIAADPSFKGTLEDAEEARRLVDALIALRKHCQLSQVEVAKRMGVRQPTVSGFEKEPSDPKLS
TLQRYARALDARLRLVLEVPTLREVPTWHRLSSYRGSARDHQVRVGADKEILMQTNWARHISVRQVEVA

Download         Length: 450 bp

>AT22164 NC_009525:2212037-2212486 [Mycobacterium tuberculosis H37Ra]
ATGAGCATTGACTTCCCTTTGGGTGACGACCTCGCCGGCTATATTGCCGAGGCGATTGCGGCTGATCCCAGCTTCAAAGG
CACTCTCGAAGACGCCGAGGAGGCACGCAGGCTGGTCGATGCGCTGATTGCGCTGCGCAAGCACTGCCAGCTGAGCCAGG
TTGAGGTTGCTAAGCGTATGGGGGTGCGCCAGCCCACCGTGAGCGGTTTCGAGAAGGAACCCAGCGACCCCAAACTGTCT
ACGCTGCAACGTTATGCCCGTGCATTGGACGCCCGGCTGCGGCTGGTGCTCGAAGTTCCCACGCTTCGCGAAGTGCCTAC
GTGGCATCGGCTCTCCTCTTATCGGGGCTCCGCACGGGACCACCAGGTCCGGGTGGGTGCAGACAAGGAAATCCTGATGC
AGACGAACTGGGCCCGCCACATTTCGGTTCGGCAGGTTGAGGTGGCATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 7AWK
PDB 7NBU


Antitoxin

Source ID Structure
PDB 5MTW
AlphaFold DB G0TLM0

References