220986

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yafN-yafO (relBE)/YafO-YafN
Location 928946..929640 Replicon chromosome
Accession NZ_CP085633
Organism Pectobacterium brasiliense strain TS20HJ1

Toxin (Protein)


Gene name yafO Uniprot ID -
Locus tag LJQ72_RS04140 Protein ID WP_200879518.1
Coordinates 929242..929640 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name yafN Uniprot ID -
Locus tag LJQ72_RS04135 Protein ID WP_040033545.1
Coordinates 928946..929239 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LJQ72_RS04120 (LJQ72_04120) 924243..926108 - 1866 WP_205534065.1 Svx/AvrXca family virulence/avirulence protein -
LJQ72_RS04125 (LJQ72_04125) 926293..927609 - 1317 WP_205534064.1 cytosine permease -
LJQ72_RS04130 (LJQ72_04130) 927624..928313 - 690 WP_040033543.1 helix-turn-helix transcriptional regulator -
LJQ72_RS04135 (LJQ72_04135) 928946..929239 + 294 WP_040033545.1 type I toxin-antitoxin system antitoxin YafN Antitoxin
LJQ72_RS04140 (LJQ72_04140) 929242..929640 + 399 WP_200879518.1 type II toxin-antitoxin system YafO family toxin Toxin
LJQ72_RS04145 (LJQ72_04145) 929971..932214 + 2244 WP_040033546.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
LJQ72_RS04150 (LJQ72_04150) 932330..932779 - 450 WP_227527755.1 hypothetical protein -
LJQ72_RS04155 (LJQ72_04155) 933123..934472 - 1350 WP_227527756.1 enolase C-terminal domain-like protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase toxin YafO

(27-130)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 15378.71 Da        Isoelectric Point: 6.6368

>T220986 WP_200879518.1 NZ_CP085633:929242-929640 [Pectobacterium brasiliense]
IRIFKSTLLCQQLSQQELDDLVADFLSYKQDGVLPDTFGRDALYDDDRTYPLVREEQVAHIHLADANAPFPKFLRQFKRT
SDKAHLVYCQSAMDPDIYLLIIILKPEAHKMARDNNNMHKVGMMAEAFRMKY

Download         Length: 399 bp

>T220986 NZ_CP117326:847429-847827 [Salmonella enterica subsp. enterica serovar Newport]
ATGCTGAAATTCATGCTTGATACCAATACCTGTATTTTCACCATCAAAAATAAGCCCGAACACATCAGAGAACGCTTCAA
CCTCAATACATCCCGAATGTGTATCAGCTCCATCACCTTAATGGAGCTGATTTACGGTGCTGAAAAAAGCCTGGCGCCGG
AGCGTAATCTTGCCGTTGTGGAGGGATTTATCTCCCGCCTTGAGGTTCTGGATTACGATACACAGGCAGCGATACATACC
GGTCAAATCCGTGCCGAACTGGCCCGCAAGGGAACACCTGTCGGGCCTTATGACCAGATGATTGCTGGCCATGCCCGTAG
CCGCGGACTGGTCGTCGTCACAAACAATCTCCGCGAGTTTGAACGCATTCCGGGTATCCGAATCGAAGACTGGTGCTAA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 10835.31 Da        Isoelectric Point: 5.1651

>AT220986 WP_040033545.1 NZ_CP085633:928946-929239 [Pectobacterium brasiliense]
MERILAEKSINITELRKNPAKYFIDEPVAVLSNNRPAGYMVSAKVFEALIDLLEDKQGSVHTAARFRPTAERLSNIADNG
VTLLKNASDKDLNEFTE

Download         Length: 294 bp

>AT220986 NZ_CP117326:847202-847429 [Salmonella enterica subsp. enterica serovar Newport]
ATGCACACAACACTTTTTTTTAGTAACCGGACCCAGGCAGTCAGATTGCCTAAATCGATATCCTTTCCGGATGATGTGAA
ACATGTCGAAATCATTGCGGTTGGCAGAAGCAGAATCATTACTCCAGTCGGAGAATCCTGGGACAGCTGGTTCGATGGCG
AAGGCGCCAGTACTGATTTTATGAGTACCAGAGAACAACCCGCAGTACAGGAACGGGAAGGATTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References