Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | txpA-ratA/- |
Location | 896991..897214 | Replicon | chromosome |
Accession | NZ_CP085289 | ||
Organism | Enterococcus faecalis strain EFS17 |
Toxin (Protein)
Gene name | txpA | Uniprot ID | - |
Locus tag | LIT95_RS04350 | Protein ID | WP_021164442.1 |
Coordinates | 897113..897214 (-) | Length | 34 a.a. |
Antitoxin (RNA)
Gene name | ratA | ||
Locus tag | - | ||
Coordinates | 896991..897176 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LIT95_RS04325 | 892608..893561 | - | 954 | WP_126254760.1 | siderophore ABC transporter substrate-binding protein | - |
LIT95_RS04330 | 893600..894355 | - | 756 | WP_002354962.1 | ATP-binding cassette domain-containing protein | - |
LIT95_RS04335 | 894352..895317 | - | 966 | WP_002371665.1 | iron chelate uptake ABC transporter family permease subunit | - |
LIT95_RS04340 | 895314..896261 | - | 948 | WP_002394759.1 | iron chelate uptake ABC transporter family permease subunit | - |
LIT95_RS04345 | 896446..896898 | + | 453 | WP_126254759.1 | YueI family protein | - |
- | 896991..897176 | + | 186 | - | - | Antitoxin |
LIT95_RS04350 | 897113..897214 | - | 102 | WP_021164442.1 | putative holin-like toxin | Toxin |
LIT95_RS04355 | 897405..899675 | - | 2271 | WP_002354955.1 | bifunctional glutamate--cysteine ligase/glutathione synthetase | - |
LIT95_RS04360 | 899846..900352 | + | 507 | WP_126254758.1 | cysteine hydrolase family protein | - |
LIT95_RS04365 | 900542..901438 | + | 897 | WP_002365354.1 | YitT family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 34 a.a. Molecular weight: 3625.38 Da Isoelectric Point: 4.5869
>T220643 WP_021164442.1 NZ_CP085289:c897214-897113 [Enterococcus faecalis]
MSIEATLELMISFATLVALLIFGILEATKNDKK
MSIEATLELMISFATLVALLIFGILEATKNDKK
Download Length: 102 bp
>T220643 NZ_CP117230:c2118305-2118096 [Staphylococcus aureus]
ATGATACATCAAAATACGATTTACACAGCGGGAATTGAAACAGAAGAACAAGTAAGTCAATTGACAGAACGCATTTCAAA
TATGATAGGTGTTCATCAAGTGATTATTAATATAATAGACGGTCAGGTAACTGTAGCGTATGAGACACCAGCAAATTTGA
ATAGTATTGAAAAAGAAATCTATGATGAAGGATACAAAATTGTATTTTAG
ATGATACATCAAAATACGATTTACACAGCGGGAATTGAAACAGAAGAACAAGTAAGTCAATTGACAGAACGCATTTCAAA
TATGATAGGTGTTCATCAAGTGATTATTAATATAATAGACGGTCAGGTAACTGTAGCGTATGAGACACCAGCAAATTTGA
ATAGTATTGAAAAAGAAATCTATGATGAAGGATACAAAATTGTATTTTAG
Antitoxin
Download Length: 186 bp
>AT220643 NZ_CP085289:896991-897176 [Enterococcus faecalis]
AAAAGAGAGGTATACGGGTACATACCTCTCCTTTATACCAGCGCCAGTTATAAGAACTGGTGGCTTACTGAGTTAAGTTT
TTATTACTGTTTAACCGTTCGGCCTGTCAAGCTTATGAACGGTTATTTTTTATCGTTTTTCGTTGCTTCAAGGATACCGA
AAATCAGTAACGCAACAAGGGTTGCA
AAAAGAGAGGTATACGGGTACATACCTCTCCTTTATACCAGCGCCAGTTATAAGAACTGGTGGCTTACTGAGTTAAGTTT
TTATTACTGTTTAACCGTTCGGCCTGTCAAGCTTATGAACGGTTATTTTTTATCGTTTTTCGTTGCTTCAAGGATACCGA
AAATCAGTAACGCAACAAGGGTTGCA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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