Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type I Classification (family/domain) txpA-ratA/-
Location 896991..897214 Replicon chromosome
Accession NZ_CP085289
Organism Enterococcus faecalis strain EFS17

Toxin (Protein)


Gene name txpA Uniprot ID -
Locus tag LIT95_RS04350 Protein ID WP_021164442.1
Coordinates 897113..897214 (-) Length 34 a.a.

Antitoxin (RNA)


Gene name ratA
Locus tag -
Coordinates 896991..897176 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LIT95_RS04325 892608..893561 - 954 WP_126254760.1 siderophore ABC transporter substrate-binding protein -
LIT95_RS04330 893600..894355 - 756 WP_002354962.1 ATP-binding cassette domain-containing protein -
LIT95_RS04335 894352..895317 - 966 WP_002371665.1 iron chelate uptake ABC transporter family permease subunit -
LIT95_RS04340 895314..896261 - 948 WP_002394759.1 iron chelate uptake ABC transporter family permease subunit -
LIT95_RS04345 896446..896898 + 453 WP_126254759.1 YueI family protein -
- 896991..897176 + 186 - - Antitoxin
LIT95_RS04350 897113..897214 - 102 WP_021164442.1 putative holin-like toxin Toxin
LIT95_RS04355 897405..899675 - 2271 WP_002354955.1 bifunctional glutamate--cysteine ligase/glutathione synthetase -
LIT95_RS04360 899846..900352 + 507 WP_126254758.1 cysteine hydrolase family protein -
LIT95_RS04365 900542..901438 + 897 WP_002365354.1 YitT family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(1-33)


Sequences


Toxin        


Download         Length: 34 a.a.        Molecular weight: 3625.38 Da        Isoelectric Point: 4.5869

>T220643 WP_021164442.1 NZ_CP085289:c897214-897113 [Enterococcus faecalis]
MSIEATLELMISFATLVALLIFGILEATKNDKK

Download         Length: 102 bp

>T220643 NZ_CP117230:c2118305-2118096 [Staphylococcus aureus]
ATGATACATCAAAATACGATTTACACAGCGGGAATTGAAACAGAAGAACAAGTAAGTCAATTGACAGAACGCATTTCAAA
TATGATAGGTGTTCATCAAGTGATTATTAATATAATAGACGGTCAGGTAACTGTAGCGTATGAGACACCAGCAAATTTGA
ATAGTATTGAAAAAGAAATCTATGATGAAGGATACAAAATTGTATTTTAG

Antitoxin


Download         Length: 186 bp

>AT220643 NZ_CP085289:896991-897176 [Enterococcus faecalis]
AAAAGAGAGGTATACGGGTACATACCTCTCCTTTATACCAGCGCCAGTTATAAGAACTGGTGGCTTACTGAGTTAAGTTT
TTATTACTGTTTAACCGTTCGGCCTGTCAAGCTTATGAACGGTTATTTTTTATCGTTTTTCGTTGCTTCAAGGATACCGA
AAATCAGTAACGCAACAAGGGTTGCA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Download structure file

References