Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 1905848..1906350 | Replicon | chromosome |
| Accession | NZ_CP085183 | ||
| Organism | Escherichia coli strain EC7518 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | U9YDH0 |
| Locus tag | LIN51_RS09115 | Protein ID | WP_000767829.1 |
| Coordinates | 1906096..1906350 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | S1Q063 |
| Locus tag | LIN51_RS09110 | Protein ID | WP_001259255.1 |
| Coordinates | 1905848..1906099 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIN51_RS09085 (1901027) | 1901027..1902094 | - | 1068 | WP_000080085.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
| LIN51_RS09090 (1902094) | 1902094..1903164 | - | 1071 | WP_077491732.1 | histidinol-phosphate transaminase | - |
| LIN51_RS09095 (1903161) | 1903161..1904465 | - | 1305 | WP_001515511.1 | histidinol dehydrogenase | - |
| LIN51_RS09100 (1904471) | 1904471..1905370 | - | 900 | WP_061093169.1 | ATP phosphoribosyltransferase | - |
| LIN51_RS09105 (1905516) | 1905516..1905566 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
| LIN51_RS09110 (1905848) | 1905848..1906099 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
| LIN51_RS09115 (1906096) | 1906096..1906350 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
| LIN51_RS09120 (1906433) | 1906433..1907257 | + | 825 | WP_000754763.1 | SDR family oxidoreductase | - |
| LIN51_RS09125 (1907303) | 1907303..1908232 | + | 930 | WP_000803351.1 | LysR substrate-binding domain-containing protein | - |
| LIN51_RS09130 (1908447) | 1908447..1908509 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
| LIN51_RS09135 (1908499) | 1908499..1909857 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| LIN51_RS09140 (1910036) | 1910036..1911094 | + | 1059 | WP_000492312.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| LIN51_RS09145 (1911108) | 1911108..1911335 | + | 228 | WP_000985278.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
>T220537 WP_000767829.1 NZ_CP085183:1906096-1906350 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
Download Length: 255 bp
>T220537 NZ_CP117167:c5728086-5727703 [Mucilaginibacter jinjuensis]
ATGGATTATCTTTTAGATACTCATATACTGTTGTGGTTCATTAATGGCGAAGAATTAGATCAGGATTTAATTAACAAAAT
TAAAGACCCTGATAATAAGATTTTTTTAAGCATTGCAAGTTTGTGGGAAATTGCGATTAAACACAGTTTAGGAAAATTAC
CGCTCCAATCTGAATTTAGTGAGCTAAAAGAGATTTTGCGTAATACAAATATTGAAATTCTACCAATTGAGTTCTCTCAT
CTTCAAGCATTATTAGCACTGCCTGATATTCATAATGACCCTTTTGATCGTATTATAATAGCTCAGGCTATTCATGAGAA
ATTAAAACTAATCACACGAGATAGCAAGTTTAAGAATTATCCCGCTGATATAACTTGGGTATAA
ATGGATTATCTTTTAGATACTCATATACTGTTGTGGTTCATTAATGGCGAAGAATTAGATCAGGATTTAATTAACAAAAT
TAAAGACCCTGATAATAAGATTTTTTTAAGCATTGCAAGTTTGTGGGAAATTGCGATTAAACACAGTTTAGGAAAATTAC
CGCTCCAATCTGAATTTAGTGAGCTAAAAGAGATTTTGCGTAATACAAATATTGAAATTCTACCAATTGAGTTCTCTCAT
CTTCAAGCATTATTAGCACTGCCTGATATTCATAATGACCCTTTTGATCGTATTATAATAGCTCAGGCTATTCATGAGAA
ATTAAAACTAATCACACGAGATAGCAAGTTTAAGAATTATCCCGCTGATATAACTTGGGTATAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
>AT220537 WP_001259255.1 NZ_CP085183:1905848-1906099 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
Download Length: 252 bp
>AT220537 NZ_CP117167:c5728289-5728086 [Mucilaginibacter jinjuensis]
ATGAGCGATTTAGATTTATATAATAGCATCATAGCGCTGCCCGAAAACCTAAAGGAAGAGGTTTCTGACTTTGTGGAGTT
TTTAAAGCAAAAAGCTGAAAAGAAAGCCGAGAAGAAAGAGCGTGTATATGGATATGCAAAAGGTTTTTTTATAATTCCTC
CTGATTTTGATGAGCCATTAGATGTTTTTAAAGACTATATGTAA
ATGAGCGATTTAGATTTATATAATAGCATCATAGCGCTGCCCGAAAACCTAAAGGAAGAGGTTTCTGACTTTGTGGAGTT
TTTAAAGCAAAAAGCTGAAAAGAAAGCCGAGAAGAAAGAGCGTGTATATGGATATGCAAAAGGTTTTTTTATAATTCCTC
CTGATTTTGATGAGCCATTAGATGTTTTTAAAGACTATATGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|