Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yafN-yafO (relBE)/YafO-YafN
Location 252005..252699 Replicon chromosome
Accession NZ_CP084897
Organism Escherichia coli strain gb37

Toxin (Protein)


Gene name yafO Uniprot ID Q47157
Locus tag LHV64_RS01185 Protein ID WP_001263489.1
Coordinates 252301..252699 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name yafN Uniprot ID S1QAE3
Locus tag LHV64_RS01180 Protein ID WP_000554758.1
Coordinates 252005..252298 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LHV64_RS01160 (247637) 247637..248134 + 498 WP_000006255.1 REP-associated tyrosine transposase RayT -
LHV64_RS01165 (248358) 248358..250070 - 1713 Protein_225 flagellar biosynthesis protein FlhA -
LHV64_RS01170 (250042) 250042..250827 + 786 WP_000207552.1 putative lateral flagellar export/assembly protein LafU -
LHV64_RS01175 (250898) 250898..251953 + 1056 WP_001226164.1 DNA polymerase IV -
LHV64_RS01180 (252005) 252005..252298 + 294 WP_000554758.1 type I toxin-antitoxin system antitoxin YafN Antitoxin
LHV64_RS01185 (252301) 252301..252699 + 399 WP_001263489.1 type II toxin-antitoxin system mRNA interferase toxin YafO Toxin
LHV64_RS01190 (252709) 252709..253161 + 453 WP_001059892.1 GNAT family N-acetyltransferase -
LHV64_RS01195 (253479) 253479..253685 + 207 Protein_231 RtcB family protein -
LHV64_RS01200 (253681) 253681..254202 + 522 Protein_232 peptide chain release factor H -
LHV64_RS01205 (254259) 254259..255716 - 1458 WP_001292994.1 cytosol nonspecific dipeptidase -
LHV64_RS01210 (255977) 255977..256435 + 459 WP_001291990.1 xanthine phosphoribosyltransferase -
- (257031) 257031..257111 + 81 NuclAT_12 - -
- (257031) 257031..257111 + 81 NuclAT_12 - -
- (257031) 257031..257111 + 81 NuclAT_12 - -
- (257031) 257031..257111 + 81 NuclAT_12 - -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase toxin YafO

(27-130)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 15487.84 Da        Isoelectric Point: 7.4215

>T219984 WP_001263489.1 NZ_CP084897:252301-252699 [Escherichia coli]
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANENNPFPPQLRQFSRT
NDEAHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHKIGKMAEAFRMRF

Download         Length: 399 bp

>T219984 NZ_CP116913:187974-188081 [Escherichia coli]
ATGACGTTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11233.76 Da        Isoelectric Point: 5.2170

>AT219984 WP_000554758.1 NZ_CP084897:252005-252298 [Escherichia coli]
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EQYLNDMTDDDFNDFKE

Download         Length: 294 bp

>AT219984 NZ_CP116913:c187925-187862 [Escherichia coli]
GTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A090J8B1

Antitoxin

Source ID Structure
AlphaFold DB S1QAE3

References