Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 245961..246502 Replicon chromosome
Accession NZ_CP084896
Organism Escherichia coli strain g62

Toxin (Protein)


Gene name yafQ Uniprot ID Q47149
Locus tag LHV62_RS01145 Protein ID WP_000615983.1
Coordinates 245961..246239 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID Q47150
Locus tag LHV62_RS01150 Protein ID WP_000729703.1
Coordinates 246242..246502 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LHV62_RS01130 (243543) 243543..244121 + 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -
LHV62_RS01135 (244327) 244327..245094 + 768 WP_000333380.1 class II glutamine amidotransferase -
LHV62_RS01140 (245065) 245065..245805 - 741 WP_001225679.1 peptidoglycan meso-diaminopimelic acid protein amidase -
LHV62_RS01145 (245961) 245961..246239 - 279 WP_000615983.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
LHV62_RS01150 (246242) 246242..246502 - 261 WP_000729703.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
LHV62_RS01155 (246712) 246712..247461 + 750 WP_000056849.1 C40 family peptidase -
LHV62_RS01160 (247637) 247637..248134 + 498 WP_000006255.1 REP-associated tyrosine transposase RayT -
LHV62_RS01165 (248358) 248358..250070 - 1713 Protein_225 flagellar biosynthesis protein FlhA -
LHV62_RS01170 (250042) 250042..250827 + 786 WP_000207552.1 putative lateral flagellar export/assembly protein LafU -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(4-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10846.62 Da        Isoelectric Point: 9.9941

>T219940 WP_000615983.1 NZ_CP084896:c246239-245961 [Escherichia coli]
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG

Download         Length: 279 bp

>T219940 NZ_CP116900:3266069-3266323 [Escherichia coli]
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9405.80 Da        Isoelectric Point: 5.0758

>AT219940 WP_000729703.1 NZ_CP084896:c246502-246242 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGIDVHKAKDADDL
FDKLGI

Download         Length: 261 bp

>AT219940 NZ_CP116900:3265821-3266072 [Escherichia coli]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATATAACTCCCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACGGAAAAGGAC
ATCATTGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4Q2U

Antitoxin

Source ID Structure
PDB 4Q2U
AlphaFold DB A0A5F1F716

References