Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2531933..2532450 | Replicon | chromosome |
| Accession | NZ_CP084892 | ||
| Organism | Staphylococcus aureus strain CC1956/ST4614-MSSA | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | A0A2S6D1N9 |
| Locus tag | LB315_RS12835 | Protein ID | WP_000113263.1 |
| Coordinates | 2531933..2532199 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | LB315_RS12840 | Protein ID | WP_000584499.1 |
| Coordinates | 2532199..2532450 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LB315_RS12810 (2527138) | 2527138..2527674 | - | 537 | WP_229373961.1 | GNAT family N-acetyltransferase | - |
| LB315_RS12815 (2528143) | 2528143..2528967 | - | 825 | WP_000594640.1 | formate/nitrite transporter family protein | - |
| LB315_RS12820 (2529170) | 2529170..2529352 | - | 183 | WP_000079140.1 | hypothetical protein | - |
| LB315_RS12825 (2529439) | 2529439..2529906 | - | 468 | WP_000153340.1 | SRPBCC domain-containing protein | - |
| LB315_RS12830 (2530092) | 2530092..2531639 | - | 1548 | WP_000727756.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| LB315_RS12835 (2531933) | 2531933..2532199 | - | 267 | WP_000113263.1 | Txe/YoeB family addiction module toxin | Toxin |
| LB315_RS12840 (2532199) | 2532199..2532450 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| LB315_RS12845 (2532614) | 2532614..2532714 | - | 101 | Protein_2489 | hypothetical protein | - |
| LB315_RS12850 (2532721) | 2532721..2533320 | - | 600 | WP_103204748.1 | DsbA family protein | - |
| LB315_RS12855 (2533339) | 2533339..2533701 | - | 363 | WP_000819846.1 | DUF4467 domain-containing protein | - |
| LB315_RS12860 (2533956) | 2533956..2535206 | + | 1251 | WP_103204749.1 | FemA/FemB family glycyltransferase FmhA | - |
| LB315_RS12865 (2535303) | 2535303..2536034 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| LB315_RS12870 (2536031) | 2536031..2536750 | - | 720 | WP_229373962.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10437.01 Da Isoelectric Point: 10.1628
>T219807 WP_000113263.1 NZ_CP084892:c2532199-2531933 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T219807 NZ_CP116720:c161920-161639 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCTCTGAAAGCCGTTCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTTAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCTCTGAAAGCCGTTCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTTAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT219807 WP_000584499.1 NZ_CP084892:c2532450-2532199 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT219807 NZ_CP116720:c162144-161917 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCCTACCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCCTACCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|