Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
Location | 1932994..1933651 | Replicon | chromosome |
Accession | NZ_CP084655 | ||
Organism | Pectobacterium brasiliense strain SR10 |
Toxin (Protein)
Gene name | higB | Uniprot ID | - |
Locus tag | LGL97_RS08635 | Protein ID | WP_039320151.1 |
Coordinates | 1933280..1933651 (-) | Length | 124 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | A0A433N287 |
Locus tag | LGL97_RS08630 | Protein ID | WP_010281167.1 |
Coordinates | 1932994..1933293 (-) | Length | 100 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LGL97_RS08610 (LGL97_08610) | 1928265..1929236 | + | 972 | WP_010281174.1 | nucleoside hydrolase | - |
LGL97_RS08615 (LGL97_08615) | 1929236..1930213 | + | 978 | WP_039317548.1 | ABC transporter permease | - |
LGL97_RS08620 (LGL97_08620) | 1930210..1931118 | + | 909 | WP_052903988.1 | ABC transporter permease | - |
LGL97_RS08625 (LGL97_08625) | 1931158..1932957 | + | 1800 | WP_225583739.1 | ABC transporter ATP-binding protein | - |
LGL97_RS08630 (LGL97_08630) | 1932994..1933293 | - | 300 | WP_010281167.1 | XRE family transcriptional regulator | Antitoxin |
LGL97_RS08635 (LGL97_08635) | 1933280..1933651 | - | 372 | WP_039320151.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
LGL97_RS08640 (LGL97_08640) | 1933989..1934687 | + | 699 | WP_225583813.1 | D-galactonate utilization transcriptional regulator DgoR | - |
LGL97_RS08645 (LGL97_08645) | 1934684..1935580 | + | 897 | WP_225583738.1 | 2-dehydro-3-deoxygalactonokinase | - |
LGL97_RS08650 (LGL97_08650) | 1935564..1936181 | + | 618 | WP_010281152.1 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase | - |
LGL97_RS08655 (LGL97_08655) | 1936178..1937326 | + | 1149 | WP_010281150.1 | galactonate dehydratase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 124 a.a. Molecular weight: 14145.07 Da Isoelectric Point: 4.7254
>T219084 WP_039320151.1 NZ_CP084655:c1933651-1933280 [Pectobacterium brasiliense]
MAWEIVTRALFDTWFDEQTETVQEEVLAHLVILEEDGPQLGRPQVDQIKGSKYKNMKELRVQVGGHPFRTFFAFDRTRKA
IVLCAGDKKGEDEKLFYERMIKIADAEFASHLISPEVKEDGDA
MAWEIVTRALFDTWFDEQTETVQEEVLAHLVILEEDGPQLGRPQVDQIKGSKYKNMKELRVQVGGHPFRTFFAFDRTRKA
IVLCAGDKKGEDEKLFYERMIKIADAEFASHLISPEVKEDGDA
Download Length: 372 bp
>T219084 NZ_CP116176:c2839532-2839281 [Escherichia coli]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACAGAAAAGGAC
ATTATTGAGTGA
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACAGAAAAGGAC
ATTATTGAGTGA
Antitoxin
Download Length: 100 a.a. Molecular weight: 11048.08 Da Isoelectric Point: 10.6442
>AT219084 WP_010281167.1 NZ_CP084655:c1933293-1932994 [Pectobacterium brasiliense]
MATLKEMMAKRSPESRARIEARTAEIRQEITLAKLREELNMSQTQLALALGVKQPSIVKMEKVENDPKLSTLKRYVTALG
GKLTLDVTLPDGKRIALTL
MATLKEMMAKRSPESRARIEARTAEIRQEITLAKLREELNMSQTQLALALGVKQPSIVKMEKVENDPKLSTLKRYVTALG
GKLTLDVTLPDGKRIALTL
Download Length: 300 bp
>AT219084 NZ_CP116176:c2839284-2839030 [Escherichia coli]
GTGAAACTAATCTGGTCTGAGGAATCATGGGACGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
GTGAAACTAATCTGGTCTGAGGAATCATGGGACGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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