Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 506285..507012 Replicon chromosome
Accession NZ_CP084026
Organism Escherichia coli strain 035053C1pKPC2_Vir_090515B1

Toxin (Protein)


Gene name higB Uniprot ID U9ZMR4
Locus tag LC440_RS02555 Protein ID WP_000550189.1
Coordinates 506285..506599 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag LC440_RS02560 Protein ID WP_000560266.1
Coordinates 506596..507012 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LC440_RS02535 (502443) 502443..503429 - 987 WP_000617698.1 Gfo/Idh/MocA family oxidoreductase -
LC440_RS02540 (503508) 503508..504200 - 693 WP_000942548.1 vancomycin high temperature exclusion protein -
LC440_RS02545 (504277) 504277..504780 - 504 WP_001333820.1 M48 family metallopeptidase -
LC440_RS02550 (504865) 504865..506001 + 1137 WP_000018695.1 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG -
LC440_RS02555 (506285) 506285..506599 + 315 WP_000550189.1 type II toxin-antitoxin system toxin HigB Toxin
LC440_RS02560 (506596) 506596..507012 + 417 WP_000560266.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
LC440_RS02565 (507057) 507057..509075 - 2019 WP_000121433.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
LC440_RS02570 (509501) 509501..511852 - 2352 WP_000695487.1 alpha-glucosidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(20-92)

Antitoxin

Cro/C1-type helix-turn-helix domain

(84-135)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12103.10 Da        Isoelectric Point: 10.0409

>T217953 WP_000550189.1 NZ_CP084026:506285-506599 [Escherichia coli]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Download         Length: 315 bp

>T217953 NZ_CP114895:c4352361-4352254 [Escherichia coli]
ATGACGTTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 14995.42 Da        Isoelectric Point: 4.4547

>AT217953 WP_000560266.1 NZ_CP084026:506596-507012 [Escherichia coli]
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID

Download         Length: 417 bp

>AT217953 NZ_CP114895:4352409-4352475 [Escherichia coli]
GGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6KMQ
PDB 5IFG
PDB 5YCL
PDB 6KML

Antitoxin

Source ID Structure

References