Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 78778..79280 | Replicon | chromosome |
| Accession | NZ_CP083481 | ||
| Organism | Escherichia coli strain elppa9 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | U9YDH0 |
| Locus tag | K9U12_RS00350 | Protein ID | WP_000767829.1 |
| Coordinates | 79026..79280 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | S1Q063 |
| Locus tag | K9U12_RS00345 | Protein ID | WP_001259255.1 |
| Coordinates | 78778..79029 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K9U12_RS00320 (73956) | 73956..75023 | - | 1068 | WP_000080136.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
| K9U12_RS00325 (75023) | 75023..76093 | - | 1071 | WP_000108937.1 | histidinol-phosphate transaminase | - |
| K9U12_RS00330 (76090) | 76090..77394 | - | 1305 | WP_021523144.1 | histidinol dehydrogenase | - |
| K9U12_RS00335 (77400) | 77400..78299 | - | 900 | WP_021523143.1 | ATP phosphoribosyltransferase | - |
| K9U12_RS00340 (78445) | 78445..78495 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
| K9U12_RS00345 (78778) | 78778..79029 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
| K9U12_RS00350 (79026) | 79026..79280 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
| K9U12_RS00355 (79363) | 79363..80187 | + | 825 | WP_000754758.1 | SDR family oxidoreductase | - |
| K9U12_RS00360 (80233) | 80233..81162 | + | 930 | WP_023154044.1 | LysR substrate-binding domain-containing protein | - |
| K9U12_RS00365 (81377) | 81377..81439 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
| K9U12_RS00370 (81429) | 81429..82787 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| K9U12_RS00375 (82966) | 82966..84024 | + | 1059 | WP_000492324.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| K9U12_RS00380 (84038) | 84038..84265 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
>T216517 WP_000767829.1 NZ_CP083481:79026-79280 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
Download Length: 255 bp
>T216517 NZ_CP113097:c5080624-5080049 [Pseudomonas putida]
ATGAGGCATTCACCGTTCACTGTTATCTATGACGCCTGTGTGCTGTATCCAGCACCTCTGCGTGATTTGCTGATGCACCT
GGCCTTGACCGGCGCGTATCGTGCGCGCTGGTCCGGGCAGATCCATGAGGAGTGGACGCGAAATGTGCTGAAAAATCGTT
CTGACCTGACAAAAGCTCAGCTTGATCGTACTGTTGAAGCCATGAACCGGGCAGTACCTGATTGTCTTGTGAACGACTAC
GAGCCGTTGATACAAGGGCTTGACCTTCCTGACGAAGATGATCGGCATGTCTTGGCCGCTGCAATCAAATGCGGTGCATC
GGTCATCGTCACATACAATCTCAAGGATTTCCCCGCTGAGATCCTGATGCGCTTTGAGATCGAGGCTTTGCATCCCGATG
TCTTTCTTTCTGACATCTGGGACCTAGACCAAGCAGCTGTGCTCGAGGCAGTCCAAAAGCAGCGCGCCTCTTTGAAAAAT
CCTAGGTACACGCCTCGCGAGCTACTAGATACCCTGCTTAAGCAACGTCTCCCAGAAATCGTCAAGCACCTTTCCAGCTA
CGAGCTGTTGATTTGA
ATGAGGCATTCACCGTTCACTGTTATCTATGACGCCTGTGTGCTGTATCCAGCACCTCTGCGTGATTTGCTGATGCACCT
GGCCTTGACCGGCGCGTATCGTGCGCGCTGGTCCGGGCAGATCCATGAGGAGTGGACGCGAAATGTGCTGAAAAATCGTT
CTGACCTGACAAAAGCTCAGCTTGATCGTACTGTTGAAGCCATGAACCGGGCAGTACCTGATTGTCTTGTGAACGACTAC
GAGCCGTTGATACAAGGGCTTGACCTTCCTGACGAAGATGATCGGCATGTCTTGGCCGCTGCAATCAAATGCGGTGCATC
GGTCATCGTCACATACAATCTCAAGGATTTCCCCGCTGAGATCCTGATGCGCTTTGAGATCGAGGCTTTGCATCCCGATG
TCTTTCTTTCTGACATCTGGGACCTAGACCAAGCAGCTGTGCTCGAGGCAGTCCAAAAGCAGCGCGCCTCTTTGAAAAAT
CCTAGGTACACGCCTCGCGAGCTACTAGATACCCTGCTTAAGCAACGTCTCCCAGAAATCGTCAAGCACCTTTCCAGCTA
CGAGCTGTTGATTTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
>AT216517 WP_001259255.1 NZ_CP083481:78778-79029 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
Download Length: 252 bp
>AT216517 NZ_CP113097:c5081088-5080624 [Pseudomonas putida]
ATGACCACCGCCGATCTCGCTCGAAGCATCCTTCCAGATGAGAAAGCGATCGCCGCGGCTACTGAATCAAGCCGCCAGAT
TGCTGCTTTCGTTTCGACGAAGCTGGATACTCAGCGTATTGAACTGGTTGATGAAGCCCAGCAACGCCAAACCGTTGAGC
TACCAACGTTCGCTCTTAGACTGCTCGGGGACATACTTAACGAACTGGCCTTAGGCAACACCGTGAAGGTGGTGCCGATC
CACGCAGAACTGACTACCCAAGAAGGCGCCGACATGCTCAACGTCTCGCGTCCGCATCTTGTCAAGCTGCTGGACGAGGG
TCAGATTCCACACACAAAAACCGGCAGCCACCGTCGCATCAAGTTCACCGATATCATGGCCTACAAAGCCGACCGTGACA
GAGCGAGCCAAGCCGCCATGGAAGAACTGGCTGCACAAGCCCAAGCGCTTAATATGGGCTATTAA
ATGACCACCGCCGATCTCGCTCGAAGCATCCTTCCAGATGAGAAAGCGATCGCCGCGGCTACTGAATCAAGCCGCCAGAT
TGCTGCTTTCGTTTCGACGAAGCTGGATACTCAGCGTATTGAACTGGTTGATGAAGCCCAGCAACGCCAAACCGTTGAGC
TACCAACGTTCGCTCTTAGACTGCTCGGGGACATACTTAACGAACTGGCCTTAGGCAACACCGTGAAGGTGGTGCCGATC
CACGCAGAACTGACTACCCAAGAAGGCGCCGACATGCTCAACGTCTCGCGTCCGCATCTTGTCAAGCTGCTGGACGAGGG
TCAGATTCCACACACAAAAACCGGCAGCCACCGTCGCATCAAGTTCACCGATATCATGGCCTACAAAGCCGACCGTGACA
GAGCGAGCCAAGCCGCCATGGAAGAACTGGCTGCACAAGCCCAAGCGCTTAATATGGGCTATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|