Detailed information of TA system
Overview
TA module
Type | I | Classification (family/domain) | symE-agrB/SymE(toxin) |
Location | 4874131..4874543 | Replicon | chromosome |
Accession | NC_008253 | ||
Organism | Escherichia coli 536 |
Toxin (Protein)
Gene name | symE | Uniprot ID | S1NWQ7 |
Locus tag | ECP_RS23725 | Protein ID | WP_000132614.1 |
Coordinates | 4874131..4874472 (-) | Length | 114 a.a. |
Antitoxin (RNA)
Gene name | agrB | ||
Locus tag | - | ||
Coordinates | 4874467..4874543 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
ECP_RS23710 | 4869200..4870480 | - | 1281 | WP_001298033.1 | DUF445 domain-containing protein | - |
ECP_RS23715 | 4870665..4871585 | + | 921 | WP_000181195.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
ECP_RS26630 | 4871813..4871893 | + | 81 | WP_020233658.1 | hypothetical protein | - |
ECP_RS24230 | 4871991..4874084 | + | 2094 | WP_000648237.1 | DUF262 domain-containing protein | - |
ECP_RS23725 | 4874131..4874472 | - | 342 | WP_000132614.1 | endoribonuclease SymE | Toxin |
- | 4874467..4874543 | + | 77 | NuclAT_6 | - | Antitoxin |
- | 4874467..4874543 | + | 77 | NuclAT_6 | - | Antitoxin |
- | 4874467..4874543 | + | 77 | NuclAT_6 | - | Antitoxin |
- | 4874467..4874543 | + | 77 | NuclAT_6 | - | Antitoxin |
- | 4874467..4874543 | + | 77 | NuclAT_7 | - | Antitoxin |
- | 4874467..4874543 | + | 77 | NuclAT_7 | - | Antitoxin |
- | 4874467..4874543 | + | 77 | NuclAT_7 | - | Antitoxin |
- | 4874467..4874543 | + | 77 | NuclAT_7 | - | Antitoxin |
ECP_RS23730 | 4874693..4876399 | - | 1707 | WP_001100192.1 | restriction endonuclease subunit S | - |
ECP_RS23735 | 4876399..4877868 | - | 1470 | WP_024174346.1 | type I restriction-modification system subunit M | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 114 a.a. Molecular weight: 12266.07 Da Isoelectric Point: 8.4982
>T21639 WP_000132614.1 NC_008253:c4874472-4874131 [Escherichia coli 536]
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA
Download Length: 342 bp
>T21639 NC_008253:c4874472-4874131 [Escherichia coli 536]
ATGACTGACACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGTCGCTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACTGCGGTAGATGTCAAAGTAATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGCCGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAGGCAGGTGCAGGAGTTTATTGGGGTGATTGC
GGGTAAACAGAAAGTCGCCTGA
ATGACTGACACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGTCGCTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACTGCGGTAGATGTCAAAGTAATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGCCGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAGGCAGGTGCAGGAGTTTATTGGGGTGATTGC
GGGTAAACAGAAAGTCGCCTGA
Antitoxin
Download Length: 77 bp
>AT21639 NC_008253:4874467-4874543 [Escherichia coli 536]
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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