Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-RelB |
| Location | 872699..873222 | Replicon | chromosome |
| Accession | NZ_CP083257 | ||
| Organism | Bifidobacterium longum subsp. longum strain BCBL-583 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | A0A4R0S5R9 |
| Locus tag | BCBL_RS03640 | Protein ID | WP_065445101.1 |
| Coordinates | 872699..872953 (-) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | - |
| Locus tag | BCBL_RS03645 | Protein ID | WP_223616754.1 |
| Coordinates | 872953..873222 (-) | Length | 90 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCBL_RS03615 (BCBL_0735) | 868368..869996 | - | 1629 | WP_223616750.1 | ATP-binding protein | - |
| BCBL_RS03620 (BCBL_0736) | 870133..870378 | - | 246 | WP_007053507.1 | hypothetical protein | - |
| BCBL_RS03625 (BCBL_0737) | 870649..871167 | + | 519 | WP_223616751.1 | hypothetical protein | - |
| BCBL_RS03630 (BCBL_0738) | 871178..871558 | + | 381 | WP_065445105.1 | hypothetical protein | - |
| BCBL_RS03635 (BCBL_0739) | 871641..872588 | + | 948 | WP_223616753.1 | hypothetical protein | - |
| BCBL_RS03640 (BCBL_0740) | 872699..872953 | - | 255 | WP_065445101.1 | Txe/YoeB family addiction module toxin | Toxin |
| BCBL_RS03645 (BCBL_0741) | 872953..873222 | - | 270 | WP_223616754.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| BCBL_RS03650 (BCBL_0742) | 873401..873781 | + | 381 | WP_065472063.1 | hypothetical protein | - |
| BCBL_RS03655 (BCBL_0743) | 873804..874226 | + | 423 | WP_131206699.1 | hypothetical protein | - |
| BCBL_RS03660 (BCBL_0744) | 874311..874652 | + | 342 | WP_223616756.1 | hypothetical protein | - |
| BCBL_RS03665 (BCBL_0745) | 874668..875099 | - | 432 | WP_131218908.1 | hypothetical protein | - |
| BCBL_RS03670 (BCBL_0746) | 875285..876736 | - | 1452 | WP_131212375.1 | hypothetical protein | - |
| BCBL_RS03675 (BCBL_0747) | 876906..877343 | - | 438 | WP_165506826.1 | hypothetical protein | - |
| BCBL_RS03680 (BCBL_0748) | 877611..877928 | - | 318 | WP_131212376.1 | HigA family addiction module antitoxin | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 826050..877928 | 51878 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 9962.38 Da Isoelectric Point: 8.4890
>T216194 WP_065445101.1 NZ_CP083257:c872953-872699 [Bifidobacterium longum subsp. longum]
MLLCWTDDAWADYLYWQSQDRRTLKRVNTLIRDMQRTPFEGIGKPEPLKWGLSGAWSRRIDSANRIIYTVADDRLCILSA
KDHY
MLLCWTDDAWADYLYWQSQDRRTLKRVNTLIRDMQRTPFEGIGKPEPLKWGLSGAWSRRIDSANRIIYTVADDRLCILSA
KDHY
Download Length: 255 bp
>T216194 NZ_CP112996:1540885-1541706 [Mycobacterium tuberculosis variant bovis]
GTGGTGGTAGCCCTCGTAGGCTCAGCAATCGTGGACTTGCATTCACGACCACCGTGGTCGAACAACGCGGTGCGTCGTCT
TGGCGTGGCACTGCGCGACGGAGTTGACCCGCCGGTCGACTGCCCGTCGTACGCCGAGGTGATGCTGTGGCATGCGGACT
TGGCCGCCGAAGTCCAGGACCGGATCGAGGGCCGGAGTTGGTCTGCGTCGGAGTTATTGGTTACCTCACGTGCGAAGAGC
CAAGACACCCTGCTAGCAAAGCTGCGGCGTCGGCCTTACCTGCAACTGAACACCATCCAAGACATCGCAGGTGTCCGCAT
CGATGCCGACCTCCTGCTGGGCGAGCAGACGAGACTTGCTCGCGAGATCGCCGACCACTTCGGTGCTGACCAGCCCGCTA
TTCATGATCTGCGTGACCACCCGCACGCCGGCTACCGGGCCGTTCATGTCTGGCTTCGGTTACCTGCCGGTCGTGTCGAG
ATACAGATTCGCACCATTTTGCAGAGCCTGTGGGCCAACTTCTACGAGCTTCTCGCTGACGCGTACGGTCGGGGCATCCG
CTATGACGAGCGGCCGGAGCAGCTAGCGGCCGGCGTTGTCCCGGCACAGCTTCAAGAGCTGGTAGGGGTTATGCAAGACG
CTTCAGCGGATCTGGCGATGCATGAAGCCGAGTGGCAACACTGTGCAGAGATCGAATACCCCGGCCAGCGGGCGATGGCG
CTTGGCGAGGCGAGCAAGAACAAGGCGACGGTGCTCGCAACGACCAAGTTTAGGCTGGAAAGGGCCATCAATGAGGCCGA
GTCGGCAGGGGGAGGTGGGTGA
GTGGTGGTAGCCCTCGTAGGCTCAGCAATCGTGGACTTGCATTCACGACCACCGTGGTCGAACAACGCGGTGCGTCGTCT
TGGCGTGGCACTGCGCGACGGAGTTGACCCGCCGGTCGACTGCCCGTCGTACGCCGAGGTGATGCTGTGGCATGCGGACT
TGGCCGCCGAAGTCCAGGACCGGATCGAGGGCCGGAGTTGGTCTGCGTCGGAGTTATTGGTTACCTCACGTGCGAAGAGC
CAAGACACCCTGCTAGCAAAGCTGCGGCGTCGGCCTTACCTGCAACTGAACACCATCCAAGACATCGCAGGTGTCCGCAT
CGATGCCGACCTCCTGCTGGGCGAGCAGACGAGACTTGCTCGCGAGATCGCCGACCACTTCGGTGCTGACCAGCCCGCTA
TTCATGATCTGCGTGACCACCCGCACGCCGGCTACCGGGCCGTTCATGTCTGGCTTCGGTTACCTGCCGGTCGTGTCGAG
ATACAGATTCGCACCATTTTGCAGAGCCTGTGGGCCAACTTCTACGAGCTTCTCGCTGACGCGTACGGTCGGGGCATCCG
CTATGACGAGCGGCCGGAGCAGCTAGCGGCCGGCGTTGTCCCGGCACAGCTTCAAGAGCTGGTAGGGGTTATGCAAGACG
CTTCAGCGGATCTGGCGATGCATGAAGCCGAGTGGCAACACTGTGCAGAGATCGAATACCCCGGCCAGCGGGCGATGGCG
CTTGGCGAGGCGAGCAAGAACAAGGCGACGGTGCTCGCAACGACCAAGTTTAGGCTGGAAAGGGCCATCAATGAGGCCGA
GTCGGCAGGGGGAGGTGGGTGA
Antitoxin
Download Length: 90 a.a. Molecular weight: 10044.31 Da Isoelectric Point: 4.1966
>AT216194 WP_223616754.1 NZ_CP083257:c873222-872953 [Bifidobacterium longum subsp. longum]
MMTQAVAYSNFRANLKTYMRRVNEDADTLLVTNADPEDNVVVMSADDYDSLMETLRVYQNPYLSDKVMRGMAQVRQGQTM
AQDLVEAGA
MMTQAVAYSNFRANLKTYMRRVNEDADTLLVTNADPEDNVVVMSADDYDSLMETLRVYQNPYLSDKVMRGMAQVRQGQTM
AQDLVEAGA
Download Length: 270 bp
>AT216194 NZ_CP112996:1541699-1541935 [Mycobacterium tuberculosis variant bovis]
GTGGGTGAGGTGGCTGGCTATGTCGTCGAATACAACCGGCGCACCCACGTGCGTCGCATCACCGAGTTCGCCACCCCGCA
AGAAGCGATGGAGCACCGGTTGAAGCTGGAAGCCGAGCGCACCGACAGCAATATCGAGATCGTTGCGCTCGTCAGTAAGT
CGTTGGGAACCCTGAAGCAAACGCATTCGCGGTACTTCACTGGTGAAGAGCTGAACGTCGGAAACGGCGCGCGGTAG
GTGGGTGAGGTGGCTGGCTATGTCGTCGAATACAACCGGCGCACCCACGTGCGTCGCATCACCGAGTTCGCCACCCCGCA
AGAAGCGATGGAGCACCGGTTGAAGCTGGAAGCCGAGCGCACCGACAGCAATATCGAGATCGTTGCGCTCGTCAGTAAGT
CGTTGGGAACCCTGAAGCAAACGCATTCGCGGTACTTCACTGGTGAAGAGCTGAACGTCGGAAACGGCGCGCGGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|