21480

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2586930..2587453 Replicon chromosome
Accession NC_007793
Organism Staphylococcus aureus subsp. aureus USA300 FPR3757

Toxin (Protein)


Gene name yoeB Uniprot ID X5DYX7
Locus tag SAUSA300_RS13295 Protein ID WP_000074048.1
Coordinates 2586930..2587196 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag SAUSA300_RS13300 Protein ID WP_000587616.1
Coordinates 2587196..2587453 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SAUSA300_RS13275 2582237..2583424 - 1188 WP_000026194.1 MFS transporter -
SAUSA300_RS13280 2583820..2584596 - 777 WP_000072147.1 iron export ABC transporter permease subunit FetB -
SAUSA300_RS13285 2584589..2585251 - 663 WP_000923520.1 ATP-binding cassette domain-containing protein -
SAUSA300_RS13290 2585499..2586575 - 1077 WP_001076671.1 M42 family metallopeptidase -
SAUSA300_RS13295 2586930..2587196 - 267 WP_000074048.1 Txe/YoeB family addiction module toxin Toxin
SAUSA300_RS13300 2587196..2587453 - 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
SAUSA300_RS13310 2587812..2588267 + 456 WP_000732082.1 DUF1307 domain-containing protein -
SAUSA300_RS13315 2588435..2590012 - 1578 WP_000143503.1 FMN-binding glutamate synthase family protein -
SAUSA300_RS13320 2590207..2590956 + 750 WP_000072444.1 hypothetical protein -
SAUSA300_RS13325 2591180..2592373 - 1194 WP_000675401.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(25-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10648.23 Da        Isoelectric Point: 10.1384

>T21480 WP_000074048.1 NC_007793:c2587196-2586930 [Staphylococcus aureus subsp. aureus USA300_FPR3757]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T21480 NC_007793:c2587196-2586930 [Staphylococcus aureus subsp. aureus USA300_FPR3757]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAAGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCTTTTGAAAAATTAGAGCCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGGTCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT21480 WP_000587616.1 NC_007793:c2587453-2587196 [Staphylococcus aureus subsp. aureus USA300_FPR3757]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT21480 NC_007793:c2587453-2587196 [Staphylococcus aureus subsp. aureus USA300_FPR3757]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7V6W
PDB 7V5Y
PDB 7V5Z

Antitoxin

Source ID Structure
AlphaFold DB W8TQT5

References