Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
| Location | 338641..339276 | Replicon | chromosome |
| Accession | NZ_CP081939 | ||
| Organism | Avibacterium paragallinarum strain p4chr1 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | A0A0F5EY10 |
| Locus tag | K5O18_RS01615 | Protein ID | WP_017806021.1 |
| Coordinates | 338641..338946 (+) | Length | 102 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | K5O18_RS01620 | Protein ID | WP_046098498.1 |
| Coordinates | 338956..339276 (+) | Length | 107 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5O18_RS01595 (K5O18_01595) | 333816..335075 | - | 1260 | WP_110478584.1 | glutamate-5-semialdehyde dehydrogenase | - |
| K5O18_RS01600 (K5O18_01600) | 335084..335755 | - | 672 | WP_046097465.1 | trimeric intracellular cation channel family protein | - |
| K5O18_RS01605 (K5O18_01605) | 335918..336736 | + | 819 | WP_017806023.1 | hypothetical protein | - |
| K5O18_RS01610 (K5O18_01610) | 337174..338529 | + | 1356 | WP_194742916.1 | outer membrane protein transport protein | - |
| K5O18_RS01615 (K5O18_01615) | 338641..338946 | + | 306 | WP_017806021.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| K5O18_RS01620 (K5O18_01620) | 338956..339276 | + | 321 | WP_046098498.1 | HigA family addiction module antitoxin | Antitoxin |
| K5O18_RS01625 (K5O18_01625) | 339323..339862 | + | 540 | WP_017806019.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| K5O18_RS01630 (K5O18_01630) | 339884..340552 | + | 669 | WP_017806018.1 | DNA mismatch repair endonuclease MutH | - |
| K5O18_RS01635 (K5O18_01635) | 340692..341414 | + | 723 | WP_017806017.1 | TerC family protein | - |
| K5O18_RS01640 (K5O18_01640) | 341570..342103 | - | 534 | WP_017806016.1 | disulfide bond formation protein DsbB | - |
| K5O18_RS01645 (K5O18_01645) | 342116..343657 | - | 1542 | WP_017806015.1 | Na(+)/H(+) antiporter NhaB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 a.a. Molecular weight: 12192.01 Da Isoelectric Point: 9.5601
>T213801 WP_017806021.1 NZ_CP081939:338641-338946 [Avibacterium paragallinarum]
MFNLTAKHFKDDYLYRFFQYGELHSKIPMTLSKVLARKLDMINAAENLNDLRSPPANRLELLEPKENKRYSIRVNKQYRL
IFHFDNGELSQLYLDPHRYDL
MFNLTAKHFKDDYLYRFFQYGELHSKIPMTLSKVLARKLDMINAAENLNDLRSPPANRLELLEPKENKRYSIRVNKQYRL
IFHFDNGELSQLYLDPHRYDL
Download Length: 306 bp
>T213801 NZ_CP109856:c4429962-4429207 [Pseudomonas aeruginosa]
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATATCCGACCGCTCCAGGGGCGCCTGGTGCGGTTGGTGGAGAG
CCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAACTGCTCGAGTCGAGCA
AGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTCCGTTATCCGCCCTTGCGCTGGGGG
TCGCGGTTTGGCCGTCGCCACGAGCCAAGCCTGTTCTACGCCGCGTTGAAGCTGGAAACGGCCATGGCCGAAAGCGCGTA
TTACCGTTGCGTCCTGTGGAGTGGCATGGTGGTGCCGCCACCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGG
CGGGCTGGAAGGTGGAGCGGGGAATCCGTCTGCAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCC
GACTACCGCGCTCCCCAGGAACTGGGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTG
CCCGGAGCGCGGCTGCAATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGC
TGTGCGAAACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGTCGCCGAAAATCTTCTCCTGGGAGCTG
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATATCCGACCGCTCCAGGGGCGCCTGGTGCGGTTGGTGGAGAG
CCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAACTGCTCGAGTCGAGCA
AGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTCCGTTATCCGCCCTTGCGCTGGGGG
TCGCGGTTTGGCCGTCGCCACGAGCCAAGCCTGTTCTACGCCGCGTTGAAGCTGGAAACGGCCATGGCCGAAAGCGCGTA
TTACCGTTGCGTCCTGTGGAGTGGCATGGTGGTGCCGCCACCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGG
CGGGCTGGAAGGTGGAGCGGGGAATCCGTCTGCAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCC
GACTACCGCGCTCCCCAGGAACTGGGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTG
CCCGGAGCGCGGCTGCAATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGC
TGTGCGAAACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGTCGCCGAAAATCTTCTCCTGGGAGCTG
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA
Antitoxin
Download Length: 107 a.a. Molecular weight: 12055.83 Da Isoelectric Point: 6.8792
>AT213801 WP_046098498.1 NZ_CP081939:338956-339276 [Avibacterium paragallinarum]
MFPTQRKPTSVGEILQEEFLLPLNLKINDLAEILDVHRNTASNLVSNHSKVTLEMAVKLAKAFGTSPEFWINLQNAVDLW
ELNHNDRFQQSLSKVKIAHYPPAFSV
MFPTQRKPTSVGEILQEEFLLPLNLKINDLAEILDVHRNTASNLVSNHSKVTLEMAVKLAKAFGTSPEFWINLQNAVDLW
ELNHNDRFQQSLSKVKIAHYPPAFSV
Download Length: 321 bp
>AT213801 NZ_CP109856:c4430464-4430096 [Pseudomonas aeruginosa]
ATGAGCGCTCTCATCAAGGAACGTCCCAGCGCCGATGCCGTCCTGGCCAAGGCCGTCCTGGCCGCGCGCGAGCAATTGGG
GCTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGCCTGCGGG
TGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGAGTCTATCGCGCACTGTATGCCCTGTTCGGCGGGCAGCAG
GAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTGGCACTGATGGGACAGGTGCAGGG
CCTGGTTCATGTGCTGGAATACCTCGATGCGATCCGCGGCAAGGTCTGA
ATGAGCGCTCTCATCAAGGAACGTCCCAGCGCCGATGCCGTCCTGGCCAAGGCCGTCCTGGCCGCGCGCGAGCAATTGGG
GCTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGCCTGCGGG
TGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGAGTCTATCGCGCACTGTATGCCCTGTTCGGCGGGCAGCAG
GAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTGGCACTGATGGGACAGGTGCAGGG
CCTGGTTCATGTGCTGGAATACCTCGATGCGATCCGCGGCAAGGTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|