Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
| Location | 708207..708934 | Replicon | chromosome |
| Accession | NZ_CP081774 | ||
| Organism | Escherichia coli strain 0H24 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | U9ZMR4 |
| Locus tag | J6O11_RS03510 | Protein ID | WP_000550189.1 |
| Coordinates | 708207..708521 (+) | Length | 105 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | J6O11_RS03515 | Protein ID | WP_000560266.1 |
| Coordinates | 708518..708934 (+) | Length | 139 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6O11_RS03490 (704372) | 704372..705358 | - | 987 | WP_223584379.1 | Gfo/Idh/MocA family oxidoreductase | - |
| J6O11_RS03495 (705437) | 705437..706120 | - | 684 | WP_001183040.1 | vancomycin high temperature exclusion protein | - |
| J6O11_RS03500 (706197) | 706197..706700 | - | 504 | WP_001295542.1 | M48 family metallopeptidase | - |
| J6O11_RS03505 (706786) | 706786..707922 | + | 1137 | WP_000018697.1 | 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG | - |
| J6O11_RS03510 (708207) | 708207..708521 | + | 315 | WP_000550189.1 | type II toxin-antitoxin system toxin HigB | Toxin |
| J6O11_RS03515 (708518) | 708518..708934 | + | 417 | WP_000560266.1 | type II toxin-antitoxin system antitoxin HigA | Antitoxin |
| J6O11_RS03520 (708979) | 708979..710997 | - | 2019 | WP_000121421.1 | NADPH-dependent 2,4-dienoyl-CoA reductase | - |
| J6O11_RS03525 (711523) | 711523..713874 | - | 2352 | WP_000695498.1 | alpha-glucosidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 a.a. Molecular weight: 12103.10 Da Isoelectric Point: 10.0409
>T213362 WP_000550189.1 NZ_CP081774:708207-708521 [Escherichia coli]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK
Download Length: 315 bp
>T213362 NZ_CP107576:3734491-3735066 [Pseudomonas asiatica]
ATGAAGCACTCGCCCTTCACGGCCATTTACGACGCGAACGTTCTTTATCCTGCCCCACTCCGTGATTTCCTGATGAACCT
TGCATTGACAGGTATTTACCGAGCACGTTGGTCAACGAAGATTCATGACGAGTGGAAACGCAATTTATTGCTCAACCGGC
CTGACCTCACCCTCGAGCAAGTAGATCGGACGTCACGGCGAATGGACGCTGCTGTACCTGACGCACTCGTAACTGACTAC
GAGTCGCTGGTAGAAGGGCTGGACTTGCCAGATAAGGATGATCGACATGTCCTCGCTGCTGCAATCAAGTGCAACGCTTC
CGTCATCGTCACCTTCAACCTGAAGGATTTCCCCGAAACGGCTCTCGACGTTTTCGATATCGAGCCCTTACACCCGGATG
ACTTCATCGCCGACCTGTGGGACCTGGACAAGGCAGCAGTACTTGAGGCTGCCCAGCGGCAGCGAATGTCCTTGAAAAAC
CCACCTCACAGCGTGCAGCAGTATCTCGACAGACTGCTTCAGCAAAAGCTTCCCGAGTCGGTGAAGTTGCTTTCAGAATT
CAAATTCCTCCTCTGA
ATGAAGCACTCGCCCTTCACGGCCATTTACGACGCGAACGTTCTTTATCCTGCCCCACTCCGTGATTTCCTGATGAACCT
TGCATTGACAGGTATTTACCGAGCACGTTGGTCAACGAAGATTCATGACGAGTGGAAACGCAATTTATTGCTCAACCGGC
CTGACCTCACCCTCGAGCAAGTAGATCGGACGTCACGGCGAATGGACGCTGCTGTACCTGACGCACTCGTAACTGACTAC
GAGTCGCTGGTAGAAGGGCTGGACTTGCCAGATAAGGATGATCGACATGTCCTCGCTGCTGCAATCAAGTGCAACGCTTC
CGTCATCGTCACCTTCAACCTGAAGGATTTCCCCGAAACGGCTCTCGACGTTTTCGATATCGAGCCCTTACACCCGGATG
ACTTCATCGCCGACCTGTGGGACCTGGACAAGGCAGCAGTACTTGAGGCTGCCCAGCGGCAGCGAATGTCCTTGAAAAAC
CCACCTCACAGCGTGCAGCAGTATCTCGACAGACTGCTTCAGCAAAAGCTTCCCGAGTCGGTGAAGTTGCTTTCAGAATT
CAAATTCCTCCTCTGA
Antitoxin
Download Length: 139 a.a. Molecular weight: 14995.42 Da Isoelectric Point: 4.4547
>AT213362 WP_000560266.1 NZ_CP081774:708518-708934 [Escherichia coli]
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID
Download Length: 417 bp
>AT213362 NZ_CP107576:3734027-3734494 [Pseudomonas asiatica]
ATGACCACCGCCGACCTCTCTCGCAAGATGCTTCCCGATGAGAAAGAGATTGCCGTGGCAGTCGAATCGAGCCGAACGCT
AGCAGCCTTCCTCTCGACAAAATCAGATACCCAACGGATTGAGCTGCTCAATGAAGAGAATCAGCGCCAGGTTGTTGAAG
TACCTACCTTCGCGCTGCGTCTGTTTGGCGAGATTCTCAGCGAGCTGGCTCTGGGGAACTCGGTCAAAGTCGTTCCAATC
CACGCCGAATTGACTACCCAAGAGGCAGCAGACCTACTCAACGTCTCTCGGCCGTACTTGGTAAAACTGCTAGACGAATC
TGTGATTCCTCACACAAAAACGGGTCGCCATCGTCGGGTCAAATTCTCCGACCTGGTTGCCTACAAGGACAAACGTGACG
AGGTAAGCCGTGCCGCAATGGACGCGCTGGCAGCCGAAGCCCAGGAGTTACGGATGGGGTACGAATGA
ATGACCACCGCCGACCTCTCTCGCAAGATGCTTCCCGATGAGAAAGAGATTGCCGTGGCAGTCGAATCGAGCCGAACGCT
AGCAGCCTTCCTCTCGACAAAATCAGATACCCAACGGATTGAGCTGCTCAATGAAGAGAATCAGCGCCAGGTTGTTGAAG
TACCTACCTTCGCGCTGCGTCTGTTTGGCGAGATTCTCAGCGAGCTGGCTCTGGGGAACTCGGTCAAAGTCGTTCCAATC
CACGCCGAATTGACTACCCAAGAGGCAGCAGACCTACTCAACGTCTCTCGGCCGTACTTGGTAAAACTGCTAGACGAATC
TGTGATTCCTCACACAAAAACGGGTCGCCATCGTCGGGTCAAATTCTCCGACCTGGTTGCCTACAAGGACAAACGTGACG
AGGTAAGCCGTGCCGCAATGGACGCGCTGGCAGCCGAAGCCCAGGAGTTACGGATGGGGTACGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|