Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) sprA1-sprA1AS/-
Location 2506921..2507078 Replicon chromosome
Accession NC_007350
Organism Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Toxin (Protein)


Gene name sprA1 Uniprot ID -
Locus tag SSP_RS13055 Protein ID WP_002441941.1
Coordinates 2506983..2507078 (-) Length 32 a.a.

Antitoxin (RNA)


Gene name sprA1AS
Locus tag -
Coordinates 2506921..2506954 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SSP_RS12210 2502709..2503542 + 834 WP_011304020.1 aldo/keto reductase -
SSP_RS12215 2504009..2504308 - 300 WP_011304021.1 hypothetical protein -
SSP_RS12220 2504685..2504918 + 234 WP_011304022.1 ferrous iron transport protein A -
SSP_RS13050 2504979..2505044 - 66 WP_162009580.1 type I toxin-antitoxin system Fst family toxin -
SSP_RS12225 2505232..2506632 - 1401 WP_011304023.1 RES family NAD+ phosphorylase -
- 2506921..2506954 + 34 - - Antitoxin
SSP_RS13055 2506983..2507078 - 96 WP_002441941.1 type I toxin-antitoxin system Fst family toxin Toxin
SSP_RS12230 2507381..2508139 - 759 WP_011304024.1 MerR family transcriptional regulator -
SSP_RS12235 2508249..2508812 - 564 WP_011304025.1 helix-turn-helix domain-containing protein -
SSP_RS12240 2509006..2510463 - 1458 WP_011304026.1 carbon starvation protein A -
SSP_RS12245 2510671..2511510 - 840 WP_002481957.1 ParB/RepB/Spo0J family partition protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.



Sequences

Toxin        


Download         Length: 32 a.a.        Molecular weight: 3560.34 Da        Isoelectric Point: 9.9256

>T21229 WP_002441941.1 NC_007350:c2507078-2506983 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC]
MLMIFVHIIAPVISGCAVAYFTYWLSSKRNK

Download         Length: 96 bp

>T21229 NC_007350:c2507078-2506983 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC]
ATGCTTATGATCTTCGTTCACATCATTGCACCAGTCATTAGTGGCTGTGCAGTTGCGTATTTTACTTATTGGCTTAGTAG
TAAACGCAATAAATAG

Antitoxin


Download         Length: 34 bp

>AT21229 NC_007350:2506921-2506954 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC]
CACCAATCCCCTCACTATTTGCGGTAGTGAGGGG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Download structure file

References