Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
Location | 13599..14256 | Replicon | plasmid pS465MC_p1 |
Accession | NZ_CP079808 | ||
Organism | Klebsiella pneumoniae subsp. pneumoniae strain WRC02_S465MC |
Toxin (Protein)
Gene name | higB | Uniprot ID | U3PDC3 |
Locus tag | KWL80_RS27040 | Protein ID | WP_000270043.1 |
Coordinates | 13906..14256 (-) | Length | 117 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | KWL80_RS27035 | Protein ID | WP_000124640.1 |
Coordinates | 13599..13901 (-) | Length | 101 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
KWL80_RS26985 (KWL80_26960) | 9233..9661 | + | 429 | WP_000591076.1 | hypothetical protein | - |
KWL80_RS26990 (KWL80_26965) | 9719..10078 | + | 360 | WP_000422769.1 | hypothetical protein | - |
KWL80_RS26995 (KWL80_26970) | 10078..10524 | + | 447 | WP_000919343.1 | hypothetical protein | - |
KWL80_RS27000 (KWL80_26975) | 10521..11039 | + | 519 | WP_000210757.1 | nitrite reductase | - |
KWL80_RS27005 (KWL80_26980) | 11039..11269 | + | 231 | WP_000972665.1 | hypothetical protein | - |
KWL80_RS27010 (KWL80_26985) | 11256..12113 | + | 858 | WP_001167036.1 | hypothetical protein | - |
KWL80_RS28540 | 12139..12330 | + | 192 | WP_001270409.1 | hypothetical protein | - |
KWL80_RS27020 (KWL80_26995) | 12333..12860 | + | 528 | WP_004201083.1 | thermonuclease family protein | - |
KWL80_RS27025 (KWL80_27000) | 12918..13190 | + | 273 | WP_001043046.1 | HU family DNA-binding protein | - |
KWL80_RS27030 (KWL80_27005) | 13279..13572 | + | 294 | WP_001239998.1 | hypothetical protein | - |
KWL80_RS27035 (KWL80_27010) | 13599..13901 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin |
KWL80_RS27040 (KWL80_27015) | 13906..14256 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
KWL80_RS27045 (KWL80_27020) | 14419..14967 | + | 549 | WP_001061573.1 | hypothetical protein | - |
KWL80_RS27050 (KWL80_27025) | 15308..15502 | + | 195 | WP_000343597.1 | hypothetical protein | - |
KWL80_RS27055 (KWL80_27030) | 15513..15884 | + | 372 | WP_000516918.1 | hypothetical protein | - |
KWL80_RS27060 (KWL80_27035) | 15877..16347 | + | 471 | WP_001281821.1 | hypothetical protein | - |
KWL80_RS27065 (KWL80_27040) | 16362..16697 | - | 336 | WP_000683477.1 | hypothetical protein | - |
KWL80_RS27070 (KWL80_27045) | 16794..17282 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
KWL80_RS27075 (KWL80_27050) | 17285..17782 | + | 498 | WP_000062185.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Conjugative plasmid | blaCMY-62 / dfrA12 / aadA2 / qacE / sul1 / armA / msr(E) / mph(E) | - | 1..161754 | 161754 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 117 a.a. Molecular weight: 13328.21 Da Isoelectric Point: 5.2421
>T210152 WP_000270043.1 NZ_CP079808:c14256-13906 [Klebsiella pneumoniae subsp. pneumoniae]
MWVIETTDTFDEWFDALDDTDRANVLASMMVLRDRGPMLSRPYADTVNGSSYSNMKELRVQSKGDPIRAFFAFDPKRKGI
LLCAGNKTGDEKRFYEVMIPIADREFAAHLDKLKKE
MWVIETTDTFDEWFDALDDTDRANVLASMMVLRDRGPMLSRPYADTVNGSSYSNMKELRVQSKGDPIRAFFAFDPKRKGI
LLCAGNKTGDEKRFYEVMIPIADREFAAHLDKLKKE
Download Length: 351 bp
>T210152 NZ_CP104442:c1945033-1944926 [Escherichia coli]
ATGACGCTCGCGAAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGGATTATTACCGCAGCGAT
TGTCGGCTGGTGGCGTAACCGGAAGTAA
ATGACGCTCGCGAAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGGATTATTACCGCAGCGAT
TGTCGGCTGGTGGCGTAACCGGAAGTAA
Antitoxin
Download Length: 101 a.a. Molecular weight: 11006.73 Da Isoelectric Point: 7.2036
>AT210152 WP_000124640.1 NZ_CP079808:c13901-13599 [Klebsiella pneumoniae subsp. pneumoniae]
MARTLDQMLATEKPEVVAKAQKAATEMLLNIHLAELRDRMNLTQGEIAASLGVRQPTVSEMEKPGRDLKLSSIKRYVEAS
GGKLRLDVELPDGTHYGFAV
MARTLDQMLATEKPEVVAKAQKAATEMLLNIHLAELRDRMNLTQGEIAASLGVRQPTVSEMEKPGRDLKLSSIKRYVEAS
GGKLRLDVELPDGTHYGFAV
Download Length: 303 bp
>AT210152 NZ_CP104442:1945086-1945147 [Escherichia coli]
TGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT
TGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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