Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 1359141..1359661 Replicon chromosome
Accession NZ_CP079216
Organism Tessaracoccus palaemonis strain J1M15

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag KDB89_RS06065 Protein ID WP_219083939.1
Coordinates 1359141..1359401 (-) Length 87 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag KDB89_RS06070 Protein ID WP_219083940.1
Coordinates 1359404..1359661 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KDB89_RS06050 (KDB89_06045) 1354456..1355718 + 1263 WP_219083938.1 iron uptake transporter deferrochelatase/peroxidase subunit -
KDB89_RS06060 (KDB89_06055) 1356724..1358055 - 1332 WP_219082186.1 ISL3 family transposase -
KDB89_RS06065 (KDB89_06060) 1359141..1359401 - 261 WP_219083939.1 Txe/YoeB family addiction module toxin Toxin
KDB89_RS06070 (KDB89_06065) 1359404..1359661 - 258 WP_219083940.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
KDB89_RS06075 (KDB89_06070) 1359756..1360562 - 807 WP_219083941.1 hypothetical protein -
KDB89_RS06080 (KDB89_06075) 1360561..1360872 + 312 WP_219083942.1 hypothetical protein -
KDB89_RS06085 (KDB89_06080) 1360877..1362010 - 1134 WP_219083943.1 SGNH/GDSL hydrolase family protein -
KDB89_RS06090 (KDB89_06085) 1362007..1362588 - 582 WP_219083944.1 TetR-like C-terminal domain-containing protein -
KDB89_RS06095 (KDB89_06090) 1362694..1363818 + 1125 WP_219083945.1 NAD-dependent epimerase/dehydratase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(1-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 10358.72 Da        Isoelectric Point: 8.0425

>T209463 WP_219083939.1 NZ_CP079216:c1359401-1359141 [Tessaracoccus palaemonis]
MLLVWDQNAWEDYLWWQAQDRRVLKRINALIQDVSRNGNEGIGKPEALRHDFAGYWSRRITEEHRLVYKIVGDEIRIAAC
RYHYGQ

Download         Length: 261 bp

>T209463 NZ_CP104112:c3849948-3849634 [Escherichia coli]
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTAGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9561.74 Da        Isoelectric Point: 4.4548

>AT209463 WP_219083940.1 NZ_CP079216:c1359661-1359404 [Tessaracoccus palaemonis]
MKTMSYTESRARYAEVLDSVVDDREEVVITRAGHDPVVIVSLEEYEALKETAYLLRSPANARRLLDAMERLEGGRGEPHD
LIAAD

Download         Length: 258 bp

>AT209463 NZ_CP104112:c3849637-3849221 [Escherichia coli]
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCGGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGCTCCTGAAAACCCCTTGCTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAACGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References