Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 526143..526660 | Replicon | chromosome |
| Accession | NZ_CP077852 | ||
| Organism | Staphylococcus aureus strain N6 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | A0A3A3ATA4 |
| Locus tag | KU516_RS02835 | Protein ID | WP_000113265.1 |
| Coordinates | 526143..526409 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | KU516_RS02840 | Protein ID | WP_000584499.1 |
| Coordinates | 526409..526660 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU516_RS02805 (521571) | 521571..522107 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
| KU516_RS02810 (522341) | 522341..523165 | - | 825 | WP_000572038.1 | formate/nitrite transporter family protein | - |
| KU516_RS02815 (523382) | 523382..523564 | - | 183 | WP_000230292.1 | hypothetical protein | - |
| KU516_RS02820 (523648) | 523648..524115 | - | 468 | WP_000153347.1 | SRPBCC domain-containing protein | - |
| KU516_RS02825 (524301) | 524301..525848 | - | 1548 | WP_000727772.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| KU516_RS02830 (526037) | 526037..526108 | - | 72 | Protein_549 | hypothetical protein | - |
| KU516_RS02835 (526143) | 526143..526409 | - | 267 | WP_000113265.1 | Txe/YoeB family addiction module toxin | Toxin |
| KU516_RS02840 (526409) | 526409..526660 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| KU516_RS02845 (526825) | 526825..526905 | - | 81 | WP_223197974.1 | hypothetical protein | - |
| KU516_RS02850 (526933) | 526933..527532 | - | 600 | WP_000162810.1 | DsbA family protein | - |
| KU516_RS02855 (527551) | 527551..527913 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| KU516_RS02860 (528168) | 528168..529418 | + | 1251 | WP_001012225.1 | FemA/FemB family glycyltransferase FmhA | - |
| KU516_RS02865 (529515) | 529515..530246 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| KU516_RS02870 (530243) | 530243..530962 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10436.96 Da Isoelectric Point: 10.0573
>T208088 WP_000113265.1 NZ_CP077852:c526409-526143 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T208088 NZ_CP103564:19387-19638 [Escherichia coli O25b:H4-ST131]
ATGAGAAAAAATAAAGGTGATGTGACTTATTTTCTTGAAAAAGAAGGTGACAATTACAGGCTTACAAAAAGGATAAAAGC
CAGAACAAATGTTAAAATCGGGAACAAAACTACGAAAATTACATTGTATGATGCCGTACTGAATGAGAATGAATTACAAC
ATATTGATTTTACGTGTGCCGGATTAAGGGAAGACGATGAGACGCCAGTTAAGAATTTAATTAAGGAGTTTATGTTAAAT
GAAACCCGATAA
ATGAGAAAAAATAAAGGTGATGTGACTTATTTTCTTGAAAAAGAAGGTGACAATTACAGGCTTACAAAAAGGATAAAAGC
CAGAACAAATGTTAAAATCGGGAACAAAACTACGAAAATTACATTGTATGATGCCGTACTGAATGAGAATGAATTACAAC
ATATTGATTTTACGTGTGCCGGATTAAGGGAAGACGATGAGACGCCAGTTAAGAATTTAATTAAGGAGTTTATGTTAAAT
GAAACCCGATAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT208088 WP_000584499.1 NZ_CP077852:c526660-526409 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT208088 NZ_CP103564:19625-19852 [Escherichia coli O25b:H4-ST131]
ATGAAACCCGATAATACACCTGAAAATGTAAAAAAATTACGTTTAAAAGCAGGATTAACACAGAAAGAATGCAGTCATAT
TTATGGTGTTGGGCTAAGAACCTGGCAGAAAAAAGAGGAGGTTAATACTCAAAACAGTCAAAGTCTGTCACTGGTTGAGT
TTGAGTTTCTTTTGTTACTTGCAGGAGAACATCCTGAATACGTGCTCTGCAAAAGGGAGTCAAAATAA
ATGAAACCCGATAATACACCTGAAAATGTAAAAAAATTACGTTTAAAAGCAGGATTAACACAGAAAGAATGCAGTCATAT
TTATGGTGTTGGGCTAAGAACCTGGCAGAAAAAAGAGGAGGTTAATACTCAAAACAGTCAAAGTCTGTCACTGGTTGAGT
TTGAGTTTCTTTTGTTACTTGCAGGAGAACATCCTGAATACGTGCTCTGCAAAAGGGAGTCAAAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|