Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/RelE-HTH |
| Location | 6876..7461 | Replicon | plasmid p1UC22850 |
| Accession | NZ_CP076822 | ||
| Organism | Acinetobacter baumannii strain UC22850 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | N8ZPD7 |
| Locus tag | KQ255_RS20400 | Protein ID | WP_000897309.1 |
| Coordinates | 7141..7461 (-) | Length | 107 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | KQ255_RS20395 | Protein ID | WP_000369780.1 |
| Coordinates | 6876..7148 (-) | Length | 91 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KQ255_RS20365 (KQ255_20265) | 2463..3167 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| KQ255_RS20370 (KQ255_20270) | 3210..3341 | + | 132 | Protein_4 | helix-turn-helix domain-containing protein | - |
| KQ255_RS20375 (KQ255_20275) | 3524..4384 | + | 861 | WP_000027057.1 | broad-spectrum class A beta-lactamase TEM-1 | - |
| KQ255_RS20380 (KQ255_20280) | 4526..5344 | + | 819 | WP_033107705.1 | aminoglycoside 3-N-acetyltransferase | - |
| KQ255_RS20385 (KQ255_20285) | 5391..6095 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| KQ255_RS20390 (KQ255_20290) | 6129..6290 | - | 162 | WP_153603871.1 | hypothetical protein | - |
| KQ255_RS20395 (KQ255_20295) | 6876..7148 | - | 273 | WP_000369780.1 | NadS family protein | Antitoxin |
| KQ255_RS20400 (KQ255_20300) | 7141..7461 | - | 321 | WP_000897309.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| KQ255_RS20405 (KQ255_20305) | 7648..7845 | - | 198 | WP_000476222.1 | hypothetical protein | - |
| KQ255_RS20410 (KQ255_20310) | 7912..8139 | - | 228 | WP_000921865.1 | hypothetical protein | - |
| KQ255_RS20415 (KQ255_20315) | 8237..8452 | - | 216 | WP_000071892.1 | cold-shock protein | - |
| KQ255_RS20420 (KQ255_20320) | 8778..9209 | - | 432 | WP_000390052.1 | hypothetical protein | - |
| KQ255_RS20425 (KQ255_20325) | 9227..9493 | - | 267 | WP_006581723.1 | hypothetical protein | - |
| KQ255_RS20430 (KQ255_20330) | 9703..11139 | + | 1437 | WP_033107832.1 | MobQ family relaxase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | blaTEM-1B / aac(3)-IIa | - | 1..11714 | 11714 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 107 a.a. Molecular weight: 12209.01 Da Isoelectric Point: 7.9835
>T206499 WP_000897309.1 NZ_CP076822:c7461-7141 [Acinetobacter baumannii]
MLFIETSIFTKQIKELVSDEEYRQLQQDLLVQPDKGDLIKNGGGIRKVRCAQGNKGKSGGIRVIYYWVTEDDQIFFLVAY
PKSVKDNLTDKETSILRQLVKEQFHG
MLFIETSIFTKQIKELVSDEEYRQLQQDLLVQPDKGDLIKNGGGIRKVRCAQGNKGKSGGIRVIYYWVTEDDQIFFLVAY
PKSVKDNLTDKETSILRQLVKEQFHG
Download Length: 321 bp
>T206499 NZ_CP102459:538190-538768 [Burkholderia multivorans]
ATGAACCCCGACACGATCCGCGCACGGCTCGATTTCCTGCGCGAAGCCGAACGCCTGAAGGACGTGCTGCGCAGCGGCCG
CACGTCGTCCGGTCGCCGCGAAAGCACCGCCGAGCACAGCTGGCGGCTGTGCCTGATGGCGCTCGTGTTCGCCGATGCAC
TGCCCGGCATCGACACGCTGAAGCTGCTCAAGCTGTGCGTCGTCCACGATCTCGGCGAGGCGCTGCACGGCGACATACCG
GCGACCGAGCAAGCCGCGCATCCGGACAAGAACCTGCACGAACGCGACGACCTGCTCACGCTGACGGCCGCACTCGATCC
CGTGCTGCGTAACGAACTCGTCGCACTGTGGGACGAATACGATGCGGCCGCGTCGCCCGAAGCGCGCGCCGCGAAGGCGC
TCGACAAGCTCGAGACGATTCTGCAGCACACGCAGGGCGCCAACGCGCCCGACTTCGACTACGCGTTCAATCTCGGCTAC
GGCCGGCGCTATACGGATGCGGCACCGCTATTCAGCGCGATCCGGGCGATCGTCGATGCGGACACGCAGCGCAGGATCGA
CGCGCAAGCACGAACGTAA
ATGAACCCCGACACGATCCGCGCACGGCTCGATTTCCTGCGCGAAGCCGAACGCCTGAAGGACGTGCTGCGCAGCGGCCG
CACGTCGTCCGGTCGCCGCGAAAGCACCGCCGAGCACAGCTGGCGGCTGTGCCTGATGGCGCTCGTGTTCGCCGATGCAC
TGCCCGGCATCGACACGCTGAAGCTGCTCAAGCTGTGCGTCGTCCACGATCTCGGCGAGGCGCTGCACGGCGACATACCG
GCGACCGAGCAAGCCGCGCATCCGGACAAGAACCTGCACGAACGCGACGACCTGCTCACGCTGACGGCCGCACTCGATCC
CGTGCTGCGTAACGAACTCGTCGCACTGTGGGACGAATACGATGCGGCCGCGTCGCCCGAAGCGCGCGCCGCGAAGGCGC
TCGACAAGCTCGAGACGATTCTGCAGCACACGCAGGGCGCCAACGCGCCCGACTTCGACTACGCGTTCAATCTCGGCTAC
GGCCGGCGCTATACGGATGCGGCACCGCTATTCAGCGCGATCCGGGCGATCGTCGATGCGGACACGCAGCGCAGGATCGA
CGCGCAAGCACGAACGTAA
Antitoxin
Download Length: 91 a.a. Molecular weight: 10122.63 Da Isoelectric Point: 8.6582
>AT206499 WP_000369780.1 NZ_CP076822:c7148-6876 [Acinetobacter baumannii]
MDNNLFDDLVASIKEAGAIKRKEIKASRVTELELPDIKEVREKTGLTQAEFAARLHISARTLQNWEQGRRYPTGPAATLI
RILDAHPTLI
MDNNLFDDLVASIKEAGAIKRKEIKASRVTELELPDIKEVREKTGLTQAEFAARLHISARTLQNWEQGRRYPTGPAATLI
RILDAHPTLI
Download Length: 273 bp
>AT206499 NZ_CP102459:537511-538068 [Burkholderia multivorans]
ATGCCCGATTCGCCGCTTCATACGCCGCCGCTGGGCCCGCAGCTGAAACGCTGGCGCCTGCTGCATCGCGTCAAGCAAAG
CCATGCCGCCGAGCTGTTCGGCGTCGCGCAATCGACGATCTCGCGCTGGGAAGCCGGCGTCCAGCAGATGTCGCCCGACG
AGCGCGCGACGGCGGAACGCCTGCTCGCCGCGCGCCTCGACTCTGCGGGCGACCATGCGCTCGCGCGGCTGGTCGCAGCG
AGCGCGGGCCGCATGCATCTCGTCTGCGATCTGACGCACCGGCTGCTTGCATGCTCGCCGTCTCGCGCAGCCGAGTTCTC
GCAGCCGCTGCCGATGCTGCTCGGCACGTCGCTCTGGCGCTATGCGACAGAAGAAATCGTCCGGATGGAAACCGCACTGG
ACACACTCGGCTGGCACGACTGCGCAGGACCGCCGAGCGTCGAATTCGACACCGGCACGAACGCATCGCGCGTCGTGCCG
ATCCATCGCAGCCGATGCCGCTGGACGCGGATCATGCTGTCGGACGGGTCGGCGGCACGGCTCGTCGAAACGCTGTAG
ATGCCCGATTCGCCGCTTCATACGCCGCCGCTGGGCCCGCAGCTGAAACGCTGGCGCCTGCTGCATCGCGTCAAGCAAAG
CCATGCCGCCGAGCTGTTCGGCGTCGCGCAATCGACGATCTCGCGCTGGGAAGCCGGCGTCCAGCAGATGTCGCCCGACG
AGCGCGCGACGGCGGAACGCCTGCTCGCCGCGCGCCTCGACTCTGCGGGCGACCATGCGCTCGCGCGGCTGGTCGCAGCG
AGCGCGGGCCGCATGCATCTCGTCTGCGATCTGACGCACCGGCTGCTTGCATGCTCGCCGTCTCGCGCAGCCGAGTTCTC
GCAGCCGCTGCCGATGCTGCTCGGCACGTCGCTCTGGCGCTATGCGACAGAAGAAATCGTCCGGATGGAAACCGCACTGG
ACACACTCGGCTGGCACGACTGCGCAGGACCGCCGAGCGTCGAATTCGACACCGGCACGAACGCATCGCGCGTCGTGCCG
ATCCATCGCAGCCGATGCCGCTGGACGCGGATCATGCTGTCGGACGGGTCGGCGGCACGGCTCGTCGAAACGCTGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|