Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-YefM
Location 1387807..1388309 Replicon chromosome
Accession NZ_CP076318
Organism Escherichia coli strain Survcare045

Toxin (Protein)


Gene name yoeB Uniprot ID U9YDH0
Locus tag KNN08_RS08455 Protein ID WP_000767829.1
Coordinates 1387807..1388061 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID S1Q063
Locus tag KNN08_RS08460 Protein ID WP_001259255.1
Coordinates 1388058..1388309 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KNN08_RS08425 (1382822) 1382822..1383049 - 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
KNN08_RS08430 (1383063) 1383063..1384121 - 1059 WP_000492333.1 thiosulfate utilization transporter TsuA/YeeE -
KNN08_RS08435 (1384300) 1384300..1385658 - 1359 WP_000019197.1 putrescine/proton symporter PlaP -
KNN08_RS08440 (1385648) 1385648..1385710 - 63 WP_010723108.1 membrane protein YoeI -
KNN08_RS08445 (1385925) 1385925..1386854 - 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
KNN08_RS08450 (1386900) 1386900..1387724 - 825 WP_000754749.1 SDR family oxidoreductase -
KNN08_RS08455 (1387807) 1387807..1388061 - 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB Toxin
KNN08_RS08460 (1388058) 1388058..1388309 - 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM Antitoxin
KNN08_RS08465 (1388593) 1388593..1388643 + 51 WP_001364200.1 his operon leader peptide -
KNN08_RS08470 (1388789) 1388789..1389688 + 900 WP_032329340.1 ATP phosphoribosyltransferase -
KNN08_RS08475 (1389694) 1389694..1390998 + 1305 WP_001446927.1 histidinol dehydrogenase -
KNN08_RS08480 (1390995) 1390995..1392065 + 1071 WP_000108945.1 histidinol-phosphate transaminase -
KNN08_RS08485 (1392065) 1392065..1393132 + 1068 WP_046464156.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10183.58 Da        Isoelectric Point: 8.0353

>T205499 WP_000767829.1 NZ_CP076318:c1388061-1387807 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY

Download         Length: 255 bp

>T205499 NZ_CP101702:c4856676-4856524 [Xanthomonas oryzae pv. oryzae]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCTGGCGC
TGGCAAGGACTTGCAGGGCGCGGGTGGGAAGGTCGAGAAAACGGCCGAAAAATGCAGCGATGGTAAGTGCTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9307.58 Da        Isoelectric Point: 4.7954

>AT205499 WP_001259255.1 NZ_CP076318:c1388309-1388058 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE

Download         Length: 252 bp

>AT205499 NZ_CP101702:c4856460-4856326 [Xanthomonas oryzae pv. oryzae]
ATGAAGCGTGCAATTGTGCTGCTCGTGCTGTCCATGTTGTCGGTCGGTCTGCTGTCGGGCTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGAAGGGCGCCGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6NY6
PDB 2A6S
PDB 6OXA
PDB 2A6R
PDB 4V8X
PDB 6OTR
PDB 6OXI
PDB 2A6Q

Antitoxin

Source ID Structure
PDB 2A6Q
AlphaFold DB A0A7U9LNR0

References