Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/-
Location 1071298..1071749 Replicon chromosome
Accession NZ_CP076248
Organism Xanthomonas translucens pv. hordei strain UPB947

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag KFS83_RS04915 Protein ID WP_230939940.1
Coordinates 1071298..1071447 (+) Length 50 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag KFS83_RS04920 Protein ID WP_196480047.1
Coordinates 1071567..1071749 (+) Length 61 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KFS83_RS04870 (KFS83_04845) 1066412..1067080 + 669 WP_003479795.1 dTMP kinase -
KFS83_RS04875 (KFS83_04850) 1067077..1068054 + 978 WP_003479796.1 DNA polymerase III subunit delta' -
KFS83_RS04880 (KFS83_04855) 1068051..1068404 + 354 WP_003479797.1 PilZ domain-containing protein -
KFS83_RS04890 (KFS83_04865) 1068695..1068952 - 258 WP_058195736.1 Txe/YoeB family addiction module toxin -
KFS83_RS04895 (KFS83_04870) 1068949..1069200 - 252 WP_003468816.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
KFS83_RS04900 (KFS83_04875) 1069309..1069842 + 534 Protein_954 endonuclease -
KFS83_RS04905 (KFS83_04880) 1069839..1070561 - 723 WP_058360631.1 helix-turn-helix transcriptional regulator -
KFS83_RS04910 (KFS83_04885) 1070685..1071128 + 444 WP_058360632.1 nuclear transport factor 2 family protein -
KFS83_RS04915 1071298..1071447 + 150 WP_230939940.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
KFS83_RS04920 (KFS83_04895) 1071567..1071749 + 183 WP_196480047.1 hypothetical protein Antitoxin
KFS83_RS04930 1072588..1072719 + 132 WP_269113130.1 hypothetical protein -
KFS83_RS04935 (KFS83_04905) 1072875..1075325 - 2451 WP_081049173.1 DEAD/DEAH box helicase family protein -
KFS83_RS04940 (KFS83_04910) 1075312..1075866 - 555 WP_058360994.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 50 a.a.        Molecular weight: 5326.12 Da        Isoelectric Point: 8.5858

>T204987 WP_230939940.1 NZ_CP076248:1071298-1071447 [Xanthomonas translucens pv. hordei]
MDDETYAKLQVLLQENLEVGDLIEGTGGLRKVRVAAKGHGKRGGARVIY

Download         Length: 150 bp

>T204987 NZ_CP101310:1866916-1867170 [Escherichia coli]
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACACCATTTGAAGGTAAGGGGAAACCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACTGATGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA

Antitoxin


Download         Length: 61 a.a.        Molecular weight: 6745.77 Da        Isoelectric Point: 8.9195

>AT204987 WP_196480047.1 NZ_CP076248:1071567-1071749 [Xanthomonas translucens pv. hordei]
MSKFFEALMESVQQMDEIVRGERAPSREFHVDAIQVKQVRLPASPSLRAANKTMEVAAGR

Download         Length: 183 bp

>AT204987 NZ_CP101310:1866668-1866919 [Escherichia coli]
ATGCGTACAATTAGTTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTCATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACGGAAAAGGAC
ATTATTGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References