Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2352821..2353338 | Replicon | chromosome |
| Accession | NZ_CP076105 | ||
| Organism | Staphylococcus aureus subsp. aureus RN4220 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | T1YC79 |
| Locus tag | KMZ21_RS11605 | Protein ID | WP_000113262.1 |
| Coordinates | 2352821..2353087 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | KMZ21_RS11610 | Protein ID | WP_000584499.1 |
| Coordinates | 2353087..2353338 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KMZ21_RS11575 (KMZ21_11575) | 2348247..2348783 | - | 537 | WP_000169315.1 | GNAT family N-acetyltransferase | - |
| KMZ21_RS11580 (KMZ21_11580) | 2349016..2349840 | - | 825 | WP_000572040.1 | formate/nitrite transporter family protein | - |
| KMZ21_RS11585 (KMZ21_11585) | 2350057..2350239 | - | 183 | WP_000230294.1 | hypothetical protein | - |
| KMZ21_RS11590 (KMZ21_11590) | 2350323..2350790 | - | 468 | WP_000153344.1 | SRPBCC domain-containing protein | - |
| KMZ21_RS11595 (KMZ21_11595) | 2350976..2352526 | - | 1551 | WP_000727762.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| KMZ21_RS11600 (KMZ21_11600) | 2352715..2352786 | - | 72 | Protein_2237 | hypothetical protein | - |
| KMZ21_RS11605 (KMZ21_11605) | 2352821..2353087 | - | 267 | WP_000113262.1 | Txe/YoeB family addiction module toxin | Toxin |
| KMZ21_RS11610 (KMZ21_11610) | 2353087..2353338 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| KMZ21_RS11615 (KMZ21_11615) | 2353503..2353604 | - | 102 | WP_001791744.1 | hypothetical protein | - |
| KMZ21_RS11620 (KMZ21_11620) | 2353611..2354210 | - | 600 | WP_000162813.1 | DsbA family protein | - |
| KMZ21_RS11625 (KMZ21_11625) | 2354229..2354591 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| KMZ21_RS11630 (KMZ21_11630) | 2354846..2356096 | + | 1251 | WP_001012222.1 | FemA/FemB family glycyltransferase FmhA | - |
| KMZ21_RS11635 (KMZ21_11635) | 2356193..2356924 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| KMZ21_RS11640 (KMZ21_11640) | 2356921..2357640 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10437.95 Da Isoelectric Point: 9.9143
>T204633 WP_000113262.1 NZ_CP076105:c2353087-2352821 [Staphylococcus aureus subsp. aureus RN4220]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T204633 NZ_CP101180:4068767-4069057 [Paenarthrobacter ureafaciens]
GTGAGCAATTCCAGCTTGGAGGGCGAGCCGTGGAACATTCAGGTCACAAGTCCGGCACTGAAAACATTTCATCGGCTTCC
CGAAAAGGCCGCCTCCGCCATAGTGGAGTTCATAACCGGGGCCCTGGCAGGCAACCCACACCGCCTCAGCAAACCCCTGA
CCAATGAACTTCTTGGCATGCGCACCGCCCGCCGAGGTGATTACCGCGTGTTGTTCACCCTCGACATCGAGGACCACGTG
CTCTATGTCCATCGAATTCAGCACCGCGCAGATGTCTACAAACCTCGCTGA
GTGAGCAATTCCAGCTTGGAGGGCGAGCCGTGGAACATTCAGGTCACAAGTCCGGCACTGAAAACATTTCATCGGCTTCC
CGAAAAGGCCGCCTCCGCCATAGTGGAGTTCATAACCGGGGCCCTGGCAGGCAACCCACACCGCCTCAGCAAACCCCTGA
CCAATGAACTTCTTGGCATGCGCACCGCCCGCCGAGGTGATTACCGCGTGTTGTTCACCCTCGACATCGAGGACCACGTG
CTCTATGTCCATCGAATTCAGCACCGCGCAGATGTCTACAAACCTCGCTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT204633 WP_000584499.1 NZ_CP076105:c2353338-2353087 [Staphylococcus aureus subsp. aureus RN4220]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT204633 NZ_CP101180:4068495-4068770 [Paenarthrobacter ureafaciens]
ATGAAGACGGTTCCCCTCAGCGAGGCCAAGGACAAACTCTCGGCCTTGGTCGAAGAAGCAGACACCACACACGAAATCAT
TCAGATCACTCGCCACGGACACCCGTCGGCCGTCCTCATGTCTGCGGATGACCTGGAATCACTTCAGGAAACCATCCACT
GGCTGTCCCAACCGGGCCTACGTGAGGATCTTGCACAGGCTCGCCGCGATATCGCAGAGGGCAACACAGTAAGCGGCGAT
GACCTGCGCCGTGAATTCGGACTGCCTCCCCGGTGA
ATGAAGACGGTTCCCCTCAGCGAGGCCAAGGACAAACTCTCGGCCTTGGTCGAAGAAGCAGACACCACACACGAAATCAT
TCAGATCACTCGCCACGGACACCCGTCGGCCGTCCTCATGTCTGCGGATGACCTGGAATCACTTCAGGAAACCATCCACT
GGCTGTCCCAACCGGGCCTACGTGAGGATCTTGCACAGGCTCGCCGCGATATCGCAGAGGGCAACACAGTAAGCGGCGAT
GACCTGCGCCGTGAATTCGGACTGCCTCCCCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|