Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 1906619..1907136 | Replicon | chromosome |
| Accession | NZ_CP076029 | ||
| Organism | Staphylococcus sp. MZ9 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | T1YC79 |
| Locus tag | KI244_RS09575 | Protein ID | WP_000113262.1 |
| Coordinates | 1906619..1906885 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | KI244_RS09580 | Protein ID | WP_000584499.1 |
| Coordinates | 1906885..1907136 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI244_RS09550 (KI244_09550) | 1902046..1902582 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
| KI244_RS09555 (KI244_09555) | 1902815..1903639 | - | 825 | WP_045177662.1 | formate/nitrite transporter family protein | - |
| KI244_RS09560 (KI244_09560) | 1903856..1904038 | - | 183 | WP_000230294.1 | hypothetical protein | - |
| KI244_RS09565 (KI244_09565) | 1904122..1904589 | - | 468 | WP_000153346.1 | SRPBCC domain-containing protein | - |
| KI244_RS09570 (KI244_09570) | 1904775..1906325 | - | 1551 | WP_045177665.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| KI244_RS14070 | 1906513..1906584 | - | 72 | WP_223200558.1 | hypothetical protein | - |
| KI244_RS09575 (KI244_09575) | 1906619..1906885 | - | 267 | WP_000113262.1 | Txe/YoeB family addiction module toxin | Toxin |
| KI244_RS09580 (KI244_09580) | 1906885..1907136 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| KI244_RS09585 (KI244_09585) | 1907301..1907402 | - | 102 | WP_001791744.1 | hypothetical protein | - |
| KI244_RS09590 (KI244_09590) | 1907409..1908008 | - | 600 | WP_000162812.1 | DsbA family protein | - |
| KI244_RS09595 (KI244_09595) | 1908027..1908389 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| KI244_RS09600 (KI244_09600) | 1908644..1909894 | + | 1251 | WP_001012241.1 | FemA/FemB family glycyltransferase FmhA | - |
| KI244_RS09605 (KI244_09605) | 1909991..1910722 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| KI244_RS09610 (KI244_09610) | 1910719..1911438 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10437.95 Da Isoelectric Point: 9.9143
>T204574 WP_000113262.1 NZ_CP076029:c1906885-1906619 [Staphylococcus sp. MZ9]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T204574 NZ_CP101114:807289-807603 [Bartonella harrusi]
ATGATACATAAAAGAACGAATGAAGGTGATTTTGTGATTGAATCTTTTGCGGATAAGCGGTGTAAAGATCTTTTAGAAGG
GAATCCGCCCAGAGGCTTTCCTCCAACTCTAGTGCGTATAGCCCAAAGAAAATTATTTATGCTTGATAAGGCAGTTGATC
TCAAGGATTTGCGCAGTCCTCCGGGAAATCGTCTAGAGGCATTGAAAGGAGAGCGTAAAGGTCAATATTCTATTCGTATT
AATGATCAGTTTCGTATTTGTTTTGAATGGCGTTCTAATGGCGCCTATGAAGTTGAAATTGTAGATTATCATTGA
ATGATACATAAAAGAACGAATGAAGGTGATTTTGTGATTGAATCTTTTGCGGATAAGCGGTGTAAAGATCTTTTAGAAGG
GAATCCGCCCAGAGGCTTTCCTCCAACTCTAGTGCGTATAGCCCAAAGAAAATTATTTATGCTTGATAAGGCAGTTGATC
TCAAGGATTTGCGCAGTCCTCCGGGAAATCGTCTAGAGGCATTGAAAGGAGAGCGTAAAGGTCAATATTCTATTCGTATT
AATGATCAGTTTCGTATTTGTTTTGAATGGCGTTCTAATGGCGCCTATGAAGTTGAAATTGTAGATTATCATTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT204574 WP_000584499.1 NZ_CP076029:c1907136-1906885 [Staphylococcus sp. MZ9]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT204574 NZ_CP101114:807620-807916 [Bartonella harrusi]
ATGAAAAATTATATAGCAATACACCCCGGAGAAATTTTACGAGAAGAATATTTAAAAGAATATGCTCTTTCTGCTTATGC
TCTTGCAAAAGCATTGAATGTTCCACGCACGAGGATAGAACGGATTGTTGCTGAAAACAGTCCAGTCACTCCCGATACAG
CACTAAGATTAGCTTATTTTTTTGATACCACTGCTGAATTTTGGCTTAACATGCAAGCTGCTTACGACGTTAGTATATTA
CAAACTGAAAAAGCAGATGAATTTGCTAAAATCAATAAATTTGAATGTAGGGTTTAA
ATGAAAAATTATATAGCAATACACCCCGGAGAAATTTTACGAGAAGAATATTTAAAAGAATATGCTCTTTCTGCTTATGC
TCTTGCAAAAGCATTGAATGTTCCACGCACGAGGATAGAACGGATTGTTGCTGAAAACAGTCCAGTCACTCCCGATACAG
CACTAAGATTAGCTTATTTTTTTGATACCACTGCTGAATTTTGGCTTAACATGCAAGCTGCTTACGACGTTAGTATATTA
CAAACTGAAAAAGCAGATGAATTTGCTAAAATCAATAAATTTGAATGTAGGGTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|