Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2440342..2440859 | Replicon | chromosome |
| Accession | NZ_CP076025 | ||
| Organism | Staphylococcus sp. MZ1 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | T1YC79 |
| Locus tag | KI229_RS12070 | Protein ID | WP_000113262.1 |
| Coordinates | 2440342..2440608 (-) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | KI229_RS12075 | Protein ID | WP_000584499.1 |
| Coordinates | 2440608..2440859 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KI229_RS12045 (KI229_12045) | 2435769..2436305 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
| KI229_RS12050 (KI229_12050) | 2436538..2437362 | - | 825 | WP_045177662.1 | formate/nitrite transporter family protein | - |
| KI229_RS12055 (KI229_12055) | 2437579..2437761 | - | 183 | WP_000230294.1 | hypothetical protein | - |
| KI229_RS12060 (KI229_12060) | 2437845..2438312 | - | 468 | WP_000153346.1 | SRPBCC domain-containing protein | - |
| KI229_RS12065 (KI229_12065) | 2438498..2440048 | - | 1551 | WP_045177665.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| KI229_RS13980 | 2440236..2440307 | - | 72 | WP_223200558.1 | hypothetical protein | - |
| KI229_RS12070 (KI229_12070) | 2440342..2440608 | - | 267 | WP_000113262.1 | Txe/YoeB family addiction module toxin | Toxin |
| KI229_RS12075 (KI229_12075) | 2440608..2440859 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| KI229_RS12080 (KI229_12080) | 2441024..2441125 | - | 102 | WP_001791744.1 | hypothetical protein | - |
| KI229_RS12085 (KI229_12085) | 2441132..2441731 | - | 600 | WP_000162812.1 | DsbA family protein | - |
| KI229_RS12090 (KI229_12090) | 2441750..2442112 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| KI229_RS12095 (KI229_12095) | 2442367..2443617 | + | 1251 | WP_001012241.1 | FemA/FemB family glycyltransferase FmhA | - |
| KI229_RS12100 (KI229_12100) | 2443714..2444445 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| KI229_RS12105 (KI229_12105) | 2444442..2445161 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10437.95 Da Isoelectric Point: 9.9143
>T204529 WP_000113262.1 NZ_CP076025:c2440608-2440342 [Staphylococcus sp. MZ1]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T204529 NZ_CP100753:521997-522419 [Serratia marcescens]
GTGGCCCAGTGGCGATGTGATATCCGCATTTCCTGGCGCACCCAGCTGTTTTCACTGTTGACCCACGGCGTTCTGATCCT
GCTGATCCTGATTTCGCCCTGGCCGGAAGGCTTTGGCCCGCTCTGGCTGGTGCTGCTGACGCTGGTGGTGTTTCAGTGCA
TTCGCAGCCAGAAGCGCATCGCCGCGGTGCAGGGCGAGCTGCGGCTGCTGGCGGATCGGCGTTTCAGCTGGCACGGCCGC
GAGTGGCGACTGGCGAAAAAACCGTGGATGCCGGGTTACGGCATGCTGTTGACGCTGCAGCCGATGGAAGGCAAAAAGCG
CCGCCGGCTGTGGCTGGCTTCCGACTGCATGAGCAAAGAGGAATGGCGCCACCTGCGGCAGCTGTTGCTGTATCCGCCGG
CGGGTGACGGCGAACAAGGTTGA
GTGGCCCAGTGGCGATGTGATATCCGCATTTCCTGGCGCACCCAGCTGTTTTCACTGTTGACCCACGGCGTTCTGATCCT
GCTGATCCTGATTTCGCCCTGGCCGGAAGGCTTTGGCCCGCTCTGGCTGGTGCTGCTGACGCTGGTGGTGTTTCAGTGCA
TTCGCAGCCAGAAGCGCATCGCCGCGGTGCAGGGCGAGCTGCGGCTGCTGGCGGATCGGCGTTTCAGCTGGCACGGCCGC
GAGTGGCGACTGGCGAAAAAACCGTGGATGCCGGGTTACGGCATGCTGTTGACGCTGCAGCCGATGGAAGGCAAAAAGCG
CCGCCGGCTGTGGCTGGCTTCCGACTGCATGAGCAAAGAGGAATGGCGCCACCTGCGGCAGCTGTTGCTGTATCCGCCGG
CGGGTGACGGCGAACAAGGTTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT204529 WP_000584499.1 NZ_CP076025:c2440859-2440608 [Staphylococcus sp. MZ1]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT204529 NZ_CP100753:521750-522016 [Serratia marcescens]
ATGGATATTAACAACAAAGCACGTATTCACTGGGCTTGCCGCCGTGGCATGCGCGAGCTGGACATCTCCATCATGCCGTT
CTTCGAATACGAATACGACAGCCTGAATGATGCGGACAAGGCGCTGTTTATCCGCCTGCTGGAGTGCGACGATCCCGATT
TGTTCAACTGGCTGATGAATCATGGCGCGCCGCAGGACGGCGAGCTGCAGAGAATGGTGACCCTGATCCAAACGCGAAAT
AAAGACCGTGGCCCAGTGGCGATGTGA
ATGGATATTAACAACAAAGCACGTATTCACTGGGCTTGCCGCCGTGGCATGCGCGAGCTGGACATCTCCATCATGCCGTT
CTTCGAATACGAATACGACAGCCTGAATGATGCGGACAAGGCGCTGTTTATCCGCCTGCTGGAGTGCGACGATCCCGATT
TGTTCAACTGGCTGATGAATCATGGCGCGCCGCAGGACGGCGAGCTGCAGAGAATGGTGACCCTGATCCAAACGCGAAAT
AAAGACCGTGGCCCAGTGGCGATGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|