Detailed information of TA system
Overview
TA module
| Type | I | Classification (family/domain) | hok-sok/- |
| Location | 36427..36681 | Replicon | plasmid pCP52E-IncFIB |
| Accession | NZ_CP075732 | ||
| Organism | Escherichia coli strain CP52E | ||
Toxin (Protein)
| Gene name | srnB | Uniprot ID | G9G1E3 |
| Locus tag | KKZ11_RS23340 | Protein ID | WP_001312851.1 |
| Coordinates | 36427..36576 (-) | Length | 50 a.a. |
Antitoxin (RNA)
| Gene name | srnC | ||
| Locus tag | - | ||
| Coordinates | 36620..36681 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KKZ11_RS23305 (32448) | 32448..32948 | + | 501 | Protein_24 | Tn3 family transposase | - |
| KKZ11_RS23310 (32982) | 32982..33170 | + | 189 | Protein_25 | IS3 family transposase | - |
| KKZ11_RS23315 (33245) | 33245..33532 | - | 288 | WP_000222766.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KKZ11_RS23320 (33529) | 33529..33780 | - | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| KKZ11_RS23325 (34746) | 34746..35603 | - | 858 | WP_039002220.1 | incFII family plasmid replication initiator RepA | - |
| KKZ11_RS23330 (35596) | 35596..35670 | - | 75 | WP_061357229.1 | RepA leader peptide Tap | - |
| KKZ11_RS23335 (35902) | 35902..36159 | - | 258 | WP_001541895.1 | replication regulatory protein RepA | - |
| KKZ11_RS23340 (36427) | 36427..36576 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin |
| - (36620) | 36620..36681 | + | 62 | NuclAT_1 | - | Antitoxin |
| - (36620) | 36620..36681 | + | 62 | NuclAT_1 | - | Antitoxin |
| - (36620) | 36620..36681 | + | 62 | NuclAT_1 | - | Antitoxin |
| - (36620) | 36620..36681 | + | 62 | NuclAT_1 | - | Antitoxin |
| KKZ11_RS23345 (37023) | 37023..37235 | - | 213 | WP_001541896.1 | ANR family transcriptional regulator | - |
| KKZ11_RS23350 (37370) | 37370..37930 | - | 561 | WP_000139310.1 | fertility inhibition protein FinO | - |
| KKZ11_RS23355 (37985) | 37985..38728 | - | 744 | WP_039002216.1 | conjugal transfer pilus acetylase TraX | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | blaTEM-1B / dfrA14 | vat | 1..115794 | 115794 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 50 a.a. Molecular weight: 5542.67 Da Isoelectric Point: 8.7678
>T204360 WP_001312851.1 NZ_CP075732:c36576-36427 [Escherichia coli]
MTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK
MTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK
Download Length: 150 bp
>T204360 NZ_CP100707:c4766369-4766058 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATGCAATTTATAGAAACGGAACTCTTTACTGAAGATGTTAAAAAACTGCTCGATGATGATGAATACCATAAGCTTCAGGT
TTTTATGGCTCAGCATCCAGATTGTGGTGATGTCATTCAGGAAACGGGCGGCCTGAGAAAAATGCGCTGGGGAGCGCGAG
GCAAAGGAAAGCGTAGTGGCGTGCGAATTATCTATTTTCACCGTAGTCAACGGTATGAGATTCGCTTGCTTCTGATTTAT
CAAAAAGGCATTAAAGATGATCTCACGCCGCAGGAAAAAGCGGTGCTTCGTATGCTGAATGAGAGGTGGTAG
ATGCAATTTATAGAAACGGAACTCTTTACTGAAGATGTTAAAAAACTGCTCGATGATGATGAATACCATAAGCTTCAGGT
TTTTATGGCTCAGCATCCAGATTGTGGTGATGTCATTCAGGAAACGGGCGGCCTGAGAAAAATGCGCTGGGGAGCGCGAG
GCAAAGGAAAGCGTAGTGGCGTGCGAATTATCTATTTTCACCGTAGTCAACGGTATGAGATTCGCTTGCTTCTGATTTAT
CAAAAAGGCATTAAAGATGATCTCACGCCGCAGGAAAAAGCGGTGCTTCGTATGCTGAATGAGAGGTGGTAG
Antitoxin
Download Length: 62 bp
>AT204360 NZ_CP075732:36620-36681 [Escherichia coli]
TTAAGGTACTTCATGCAGACCTCACGAGTTAATGGATTAACGAGTGGGGTCTTCGCATTTCT
TTAAGGTACTTCATGCAGACCTCACGAGTTAATGGATTAACGAGTGGGGTCTTCGCATTTCT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
