Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 1859123..1859625 | Replicon | chromosome |
| Accession | NZ_CP075477 | ||
| Organism | Escherichia coli strain NT1W25 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | U9YDH0 |
| Locus tag | IGI33_RS08920 | Protein ID | WP_000767829.1 |
| Coordinates | 1859371..1859625 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | S1Q063 |
| Locus tag | IGI33_RS08915 | Protein ID | WP_001259255.1 |
| Coordinates | 1859123..1859374 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IGI33_RS08890 (1854301) | 1854301..1855368 | - | 1068 | WP_000080136.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
| IGI33_RS08895 (1855368) | 1855368..1856438 | - | 1071 | WP_000108937.1 | histidinol-phosphate transaminase | - |
| IGI33_RS08900 (1856435) | 1856435..1857739 | - | 1305 | WP_021523144.1 | histidinol dehydrogenase | - |
| IGI33_RS08905 (1857745) | 1857745..1858644 | - | 900 | WP_021523143.1 | ATP phosphoribosyltransferase | - |
| IGI33_RS08910 (1858790) | 1858790..1858840 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
| IGI33_RS08915 (1859123) | 1859123..1859374 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
| IGI33_RS08920 (1859371) | 1859371..1859625 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
| IGI33_RS08925 (1859708) | 1859708..1860532 | + | 825 | WP_000754758.1 | SDR family oxidoreductase | - |
| IGI33_RS08930 (1860578) | 1860578..1861507 | + | 930 | WP_023154044.1 | LysR substrate-binding domain-containing protein | - |
| IGI33_RS08935 (1861722) | 1861722..1861784 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
| IGI33_RS08940 (1861774) | 1861774..1863132 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| IGI33_RS08945 (1863311) | 1863311..1864369 | + | 1059 | WP_000492324.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| IGI33_RS08950 (1864383) | 1864383..1864610 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
>T203722 WP_000767829.1 NZ_CP075477:1859371-1859625 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
Download Length: 255 bp
>T203722 NZ_CP100297:1103982-1104479 [Burkholderia glumae]
ATGACGGGCTGGCGCGCGCCCGAACCGCTCAGCGACGCGCACGGGCTCGACGATTTCGATTCCGGCGTCGCGAGCCTCGA
CACGTGGCTCAAACGCCGTGCACTGGCCAATCAGCGTAGCGGTGCGTCGCGGACCTTTGTGGCGACGCGAGACGGTCGAG
TGGGGGCGTACTACGCACTCGCGTCCGGCGCGGTTACGCTCGAGGTCGCACCGGGCCGCTTCCGGCGCAACATGCCCGAT
CCGATACCGGTGGTTGTGCTCGGGCGTCTCGCCGTCGATCGCGCCCATCAGGGCATTGGGGTTGGGCGTGCGCTGGTACG
CGATGCGGGCTTGCGTGTGTTGCACGCCGCAGCGGCCATCGGGATTCGCAGCCTGATCGTGCATGCACTCTCGGACTCGG
CCAAGGCGTTCTATGAGCGGGTCGGCTTTGAGGCGTCGCCGCTCGATCCGATGCTGCTCCTGATCACGCTGGCCGACCTC
GAGCACGCCTTGTCATGA
ATGACGGGCTGGCGCGCGCCCGAACCGCTCAGCGACGCGCACGGGCTCGACGATTTCGATTCCGGCGTCGCGAGCCTCGA
CACGTGGCTCAAACGCCGTGCACTGGCCAATCAGCGTAGCGGTGCGTCGCGGACCTTTGTGGCGACGCGAGACGGTCGAG
TGGGGGCGTACTACGCACTCGCGTCCGGCGCGGTTACGCTCGAGGTCGCACCGGGCCGCTTCCGGCGCAACATGCCCGAT
CCGATACCGGTGGTTGTGCTCGGGCGTCTCGCCGTCGATCGCGCCCATCAGGGCATTGGGGTTGGGCGTGCGCTGGTACG
CGATGCGGGCTTGCGTGTGTTGCACGCCGCAGCGGCCATCGGGATTCGCAGCCTGATCGTGCATGCACTCTCGGACTCGG
CCAAGGCGTTCTATGAGCGGGTCGGCTTTGAGGCGTCGCCGCTCGATCCGATGCTGCTCCTGATCACGCTGGCCGACCTC
GAGCACGCCTTGTCATGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
>AT203722 WP_001259255.1 NZ_CP075477:1859123-1859374 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
Download Length: 252 bp
>AT203722 NZ_CP100297:1103704-1103985 [Burkholderia glumae]
ATGGCCTCGACCACCCCGCGCGACACCCTGAACTTACGCATTCGTCCTGACGATCGCAGCTTGATTGACCGCGCCGCAGC
GGCCGCCCACAAAACGCGTACCGACTTCGTCCTGGACGCAGCGCGGGCCGCCGCCGAACAGACCTTGCTCGACCAGGTTG
TTCTGAGCGCCGAGCCGCAGGCCTACGCGGCCTTCCTGGCGCGCCTGGATGCGCCCGCCCAGCCGAACGCGGCACTGCGC
CAGACCATGCAGACGCGCGCGCCCTGGGACCCCGCCGCATGA
ATGGCCTCGACCACCCCGCGCGACACCCTGAACTTACGCATTCGTCCTGACGATCGCAGCTTGATTGACCGCGCCGCAGC
GGCCGCCCACAAAACGCGTACCGACTTCGTCCTGGACGCAGCGCGGGCCGCCGCCGAACAGACCTTGCTCGACCAGGTTG
TTCTGAGCGCCGAGCCGCAGGCCTACGCGGCCTTCCTGGCGCGCCTGGATGCGCCCGCCCAGCCGAACGCGGCACTGCGC
CAGACCATGCAGACGCGCGCGCCCTGGGACCCCGCCGCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|