Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 327169..327755 Replicon chromosome
Accession NZ_CP075452
Organism Klebsiella pneumoniae strain RGF20-1

Toxin (Protein)


Gene name doc Uniprot ID A0A486Q6W0
Locus tag KI738_RS01520 Protein ID WP_020802489.1
Coordinates 327387..327755 (+) Length 123 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID W9B1V1
Locus tag KI738_RS01515 Protein ID WP_004174006.1
Coordinates 327169..327390 (+) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KI738_RS01495 (323326) 323326..324252 + 927 WP_065812022.1 high-affinity branched-chain amino acid ABC transporter permease LivH -
KI738_RS01500 (324249) 324249..325526 + 1278 WP_004174005.1 branched chain amino acid ABC transporter permease LivM -
KI738_RS01505 (325523) 325523..326290 + 768 WP_002920803.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG -
KI738_RS01510 (326292) 326292..327005 + 714 WP_004145133.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF -
KI738_RS01515 (327169) 327169..327390 + 222 WP_004174006.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
KI738_RS01520 (327387) 327387..327755 + 369 WP_020802489.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
KI738_RS01525 (328028) 328028..329344 + 1317 WP_004174008.1 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB -
KI738_RS01530 (329451) 329451..330338 + 888 WP_002920792.1 sn-glycerol-3-phosphate ABC transporter permease UgpA -
KI738_RS01535 (330335) 330335..331180 + 846 WP_004145129.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
KI738_RS01540 (331182) 331182..332252 + 1071 WP_004150074.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 324249..332989 8740


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Death on curing protein

(1-121)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-50)


Sequences

Toxin        


Download         Length: 123 a.a.        Molecular weight: 13542.89 Da        Isoelectric Point: 8.6410

>T203568 WP_020802489.1 NZ_CP075452:327387-327755 [Klebsiella pneumoniae]
MTLQIISAEEIIQFHDRLLRVTSGVAGMPDPGRAEAIMYRVLNKIEYEGVTDVWRLAAMHLLAISRGHIFNDGNKRTALF
ITLLFLKRNGIILPANPDFVGMTVEAAAGQLTLEQIVARLRG

Download         Length: 369 bp

>T203568 NZ_CP100131:c1582750-1582568 [Burkholderia glumae]
ATGAACAGCGCGAACCTTCTCCGAACCCTGAAAGCCGACGGCTGGTATCTCGTCAACACCGTCGGCTCGCATCACCAGTT
CAAGCATGCGACCAAGCCAGGTAAGGTGACGGTGCCACACCCGAAGAAAGACCTTCCCCAAGGCACCGTGCGCAGCATCC
TGAAACAAGCCGGTCTGAAATGA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8151.15 Da        Isoelectric Point: 4.7769

>AT203568 WP_004174006.1 NZ_CP075452:327169-327390 [Klebsiella pneumoniae]
MRTVNYSEARQNLADVLESAVTGVPVTITRRGHKSAVIISAEEFERYQAARMDDEFAAIMAVHGDEIRELADK

Download         Length: 222 bp

>AT203568 NZ_CP100131:c1582541-1582146 [Burkholderia glumae]
ATGCTCTATCCGCTCTATGTCCACGTCGGTGACGACAAGCACGCCCACGGTGTCACCTTCCCCGACTTTCCCGGCTGCCA
CGCAGCGGCCGACTCCTGGGACGAACTGCCCGCAGCCGTGCAGGAGGCCGCCCAGGCCCATTTCGAGGGCGACGACAGCC
CGATTCCCGAGCCTTCCGCGCTCGAAGATTTGACGCGCGATCCGGAATACACCGGCGGCGTCTGGATGATCTTCGATATC
GACCTGTCGAAGATCAACACGAAAGCCGTGCGCTTCAACGTCAGCATGTCCGAGCGGCTGCTCCAGAAGATCGACGCCAA
GGCGCGCGCGCGCAAACTCTCGCGATCGGCCTTCCTTGCGATTGCGGCAGAACACGAAATGGAAGCTGACGCCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A486Q6W0

Antitoxin

Source ID Structure
AlphaFold DB A0A5E5YJY7

References