Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/Tad-HTH_37 |
| Location | 1894190..1894817 | Replicon | chromosome |
| Accession | NZ_CP075138 | ||
| Organism | Salmonella enterica strain CFSAN044875 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | A0A5Y2FSH1 |
| Locus tag | A7R97_RS24505 | Protein ID | WP_024131287.1 |
| Coordinates | 1894488..1894817 (-) | Length | 110 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | A7R97_RS24500 | Protein ID | WP_000147078.1 |
| Coordinates | 1894190..1894498 (-) | Length | 103 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7R97_RS09055 (1889447) | 1889447..1890274 | - | 828 | WP_053299710.1 | DUF2303 family protein | - |
| A7R97_RS09060 (1890332) | 1890332..1890703 | - | 372 | WP_000997190.1 | hypothetical protein | - |
| A7R97_RS09065 (1891403) | 1891403..1891678 | - | 276 | WP_001514782.1 | hypothetical protein | - |
| A7R97_RS09070 (1891680) | 1891680..1891931 | - | 252 | WP_001574551.1 | hypothetical protein | - |
| A7R97_RS09075 (1891859) | 1891859..1892044 | - | 186 | WP_070794471.1 | ClpX C4-type zinc finger protein | - |
| A7R97_RS09080 (1892249) | 1892249..1892944 | - | 696 | WP_053299709.1 | helix-turn-helix transcriptional regulator | - |
| A7R97_RS09085 (1893042) | 1893042..1893266 | + | 225 | WP_001191666.1 | helix-turn-helix transcriptional regulator | - |
| A7R97_RS09090 (1893295) | 1893295..1893849 | + | 555 | WP_000509731.1 | YmfL family putative regulatory protein | - |
| A7R97_RS24495 (1893995) | 1893995..1894171 | + | 177 | WP_000281065.1 | DUF4222 domain-containing protein | - |
| A7R97_RS24500 (1894190) | 1894190..1894498 | - | 309 | WP_000147078.1 | helix-turn-helix transcriptional regulator | Antitoxin |
| A7R97_RS24505 (1894488) | 1894488..1894817 | - | 330 | WP_024131287.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| A7R97_RS24510 (1894731) | 1894731..1895696 | + | 966 | WP_223196747.1 | Rha family phage regulatory protein | - |
| A7R97_RS09100 (1895693) | 1895693..1895917 | + | 225 | WP_000620702.1 | hypothetical protein | - |
| A7R97_RS09105 (1895914) | 1895914..1896888 | + | 975 | WP_000096529.1 | conserved phage C-terminal domain-containing protein | - |
| A7R97_RS09110 (1896885) | 1896885..1897358 | + | 474 | WP_000054227.1 | PerC family transcriptional regulator | - |
| A7R97_RS09115 (1897355) | 1897355..1898236 | + | 882 | WP_000200166.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| A7R97_RS09120 (1898245) | 1898245..1898634 | + | 390 | WP_000779149.1 | RusA family crossover junction endodeoxyribonuclease | - |
| A7R97_RS09125 (1898651) | 1898651..1899511 | + | 861 | WP_001061452.1 | KilA-N domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 110 a.a. Molecular weight: 12781.80 Da Isoelectric Point: 9.8238
>T203239 WP_024131287.1 NZ_CP075138:c1894817-1894488 [Salmonella enterica]
MNYTIEYYNEEVRIEVDQLPLSMRARYQHLVERMKVYGSNLGEPHTSAFGDGLFELRIKGSDGIARVFYCTLAGKRIVML
HSFIKKTQKTPVAERKKAETRMKEVKHDW
MNYTIEYYNEEVRIEVDQLPLSMRARYQHLVERMKVYGSNLGEPHTSAFGDGLFELRIKGSDGIARVFYCTLAGKRIVML
HSFIKKTQKTPVAERKKAETRMKEVKHDW
Download Length: 330 bp
>T203239 NZ_CP099898:2385495-2385773 [Escherichia albertii]
ATGATAATGAATTTCAGACACAAGGGATTGCGTGACTTGTTTCTTCTCGGCAAAACCTCCGGCGTTATACCGACGCAAGT
CAAACGATTACGCCACCGACTCGCTGTGATTGATGCTGCAAGCAGTCTTGTTGATATCGATATGCCCGGTTACCGACTAC
ACCCATTAAGCGGCGATCGCGATGGCATCTGGGCAATATCTGTATCAGGCAACTGGCGAATCACGTTTGAGTTCGTCAAT
GGCGATGCATACATACTGGATTACGAGGACTATCACTGA
ATGATAATGAATTTCAGACACAAGGGATTGCGTGACTTGTTTCTTCTCGGCAAAACCTCCGGCGTTATACCGACGCAAGT
CAAACGATTACGCCACCGACTCGCTGTGATTGATGCTGCAAGCAGTCTTGTTGATATCGATATGCCCGGTTACCGACTAC
ACCCATTAAGCGGCGATCGCGATGGCATCTGGGCAATATCTGTATCAGGCAACTGGCGAATCACGTTTGAGTTCGTCAAT
GGCGATGCATACATACTGGATTACGAGGACTATCACTGA
Antitoxin
Download Length: 103 a.a. Molecular weight: 11110.77 Da Isoelectric Point: 7.0152
>AT203239 WP_000147078.1 NZ_CP075138:c1894498-1894190 [Salmonella enterica]
MTGKRNAPTITHDEMAAKWMEDPAFKAEYDAIADEFALLDEMLAARKEAGLTQAEVAERMGTKATAITRMESNLAAGVSG
PSFTTLKKFAQATGKKLQIRFV
MTGKRNAPTITHDEMAAKWMEDPAFKAEYDAIADEFALLDEMLAARKEAGLTQAEVAERMGTKATAITRMESNLAAGVSG
PSFTTLKKFAQATGKKLQIRFV
Download Length: 309 bp
>AT203239 NZ_CP099898:2385773-2386057 [Escherichia albertii]
ATGAAAATGGCCAATCATCCCCGCCCGGGGGACATTATTCAGGAATCACTGGACGAACTGAACGTCAGCCTGCGCGAGTT
TGCCAGAGCAATGGAAATTGCGCCCTCAACGGCAAGCCGACTGTTGACCGGAAAAGCGGCTTTGACGCCAGAAATGGCGA
TTAAACTTTCCGTGGTGATCGGCAGTTCGCCGCAAATGTGGCTGAATCTGCAAAATGCCTGGAGTCTGGCAGAGGCTGAG
AAAACGGTGGATGTGTCGCGGTTGCGCCGTCTGGTTGCGCAATAA
ATGAAAATGGCCAATCATCCCCGCCCGGGGGACATTATTCAGGAATCACTGGACGAACTGAACGTCAGCCTGCGCGAGTT
TGCCAGAGCAATGGAAATTGCGCCCTCAACGGCAAGCCGACTGTTGACCGGAAAAGCGGCTTTGACGCCAGAAATGGCGA
TTAAACTTTCCGTGGTGATCGGCAGTTCGCCGCAAATGTGGCTGAATCTGCAAAATGCCTGGAGTCTGGCAGAGGCTGAG
AAAACGGTGGATGTGTCGCGGTTGCGCCGTCTGGTTGCGCAATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|