Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
| Location | 4602103..4602857 | Replicon | chromosome |
| Accession | NZ_CP075112 | ||
| Organism | Salmonella enterica subsp. enterica serovar Corvallis strain CFSAN059903 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | A0A5V1GRS6 |
| Locus tag | CCO42_RS21935 | Protein ID | WP_063809159.1 |
| Coordinates | 4602103..4602414 (+) | Length | 104 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | CCO42_RS21940 | Protein ID | WP_001259011.1 |
| Coordinates | 4602411..4602857 (+) | Length | 149 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO42_RS21905 (4597769) | 4597769..4598671 | + | 903 | WP_000331361.1 | formate dehydrogenase subunit beta | - |
| CCO42_RS21910 (4598668) | 4598668..4599303 | + | 636 | WP_000829025.1 | formate dehydrogenase cytochrome b556 subunit | - |
| CCO42_RS21915 (4599300) | 4599300..4600229 | + | 930 | WP_000027730.1 | formate dehydrogenase accessory protein FdhE | - |
| CCO42_RS21920 (4600267) | 4600267..4600641 | - | 375 | WP_000238494.1 | type II toxin-antitoxin system VapC family toxin | - |
| CCO42_RS21925 (4600641) | 4600641..4600883 | - | 243 | WP_001523745.1 | CopG family transcriptional regulator | - |
| CCO42_RS21930 (4601088) | 4601088..4602017 | + | 930 | WP_063809158.1 | alpha/beta hydrolase | - |
| CCO42_RS21935 (4602103) | 4602103..4602414 | + | 312 | WP_063809159.1 | type II toxin-antitoxin system HigB family toxin | Toxin |
| CCO42_RS21940 (4602411) | 4602411..4602857 | + | 447 | WP_001259011.1 | type II toxin-antitoxin system HigA family antitoxin | Antitoxin |
| CCO42_RS21945 (4602872) | 4602872..4603813 | - | 942 | WP_001518251.1 | fatty acid biosynthesis protein FabY | - |
| CCO42_RS21950 (4603858) | 4603858..4604295 | - | 438 | WP_000560969.1 | D-aminoacyl-tRNA deacylase | - |
| CCO42_RS21955 (4604292) | 4604292..4605164 | - | 873 | WP_000921423.1 | virulence factor BrkB family protein | - |
| CCO42_RS21960 (4605158) | 4605158..4605757 | - | 600 | WP_000965695.1 | glucose-1-phosphatase | - |
| CCO42_RS21965 (4605948) | 4605948..4606751 | - | 804 | WP_000059693.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| CCO42_RS21970 (4606785) | 4606785..4607681 | - | 897 | WP_001520529.1 | sugar kinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 a.a. Molecular weight: 12458.43 Da Isoelectric Point: 9.4811
>T202926 WP_063809159.1 NZ_CP075112:4602103-4602414 [Salmonella enterica subsp. enterica serovar Corvallis]
VYVISRKPFNEAMLMYPNHELALTELLNVLEKKTFTQPEEMKRYIPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRLHKI
FVKHIVSHAEYDKLTAYYRGNKE
VYVISRKPFNEAMLMYPNHELALTELLNVLEKKTFTQPEEMKRYIPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRLHKI
FVKHIVSHAEYDKLTAYYRGNKE
Download Length: 312 bp
>T202926 NZ_CP099752:c2782682-2782371 [Escherichia coli]
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGACCGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTTTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA
ATGCTCTTCATCGAAACGGAAATTTTTACTGAAGATGTTCAAAAACTGCTGACCGACGATGAATTCAGTCGTTTTCAGTT
TTTCCTGGCCTTGAATCCTGACTATGGTGAGGTAATACCTGAAACTGGTGGGTTAAGAAAGGTTCGATGGGTTTCAGGAG
GAAAGGGGAAACGTGCTGGTGTCAGGGTTATTTACTTTCATCAGGTTAAACATTATGAGATCAGATTACTGCTTATTTAT
CGTAAGGGTATTAAAGATGATCTGTCTCCCCAGGAAAAAGCAATGCTCCGGTTGTTAAATACGAGGTGGTAA
Antitoxin
Download Length: 149 a.a. Molecular weight: 16734.08 Da Isoelectric Point: 6.6451
>AT202926 WP_001259011.1 NZ_CP075112:4602411-4602857 [Salmonella enterica subsp. enterica serovar Corvallis]
MRTHRQMDATSAKKIVDTFSDAVKTVPLMGEDRNDNEYRRALALVEFLVDHDDLENPLFELLCARISEYEKHAPEFKALN
QHLEKTPPGVSVLRTLMDQYGLKAADLANELGSKSNVSNILNGRRALTVNHIKALTQRFKLPADAFIE
MRTHRQMDATSAKKIVDTFSDAVKTVPLMGEDRNDNEYRRALALVEFLVDHDDLENPLFELLCARISEYEKHAPEFKALN
QHLEKTPPGVSVLRTLMDQYGLKAADLANELGSKSNVSNILNGRRALTVNHIKALTQRFKLPADAFIE
Download Length: 447 bp
>AT202926 NZ_CP099752:c2782370-2782080 [Escherichia coli]
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
GCGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCTGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG
ATGGATAAGGCACTTTTTGAGCGGTTGACTCACAGCATGGCCCAGATGAATGAAATTATTGAAGGAACGCGACAGCCTTC
GCGGACTTTTGAAGTTGATGCTATGAAAATCAAAGAAATACGCCGCGCTTCAGGGTTGTCACAATCTAAATTTGCCGATC
TTATTTCTGTAAGCGTAGACACGTTGCGTAACTGGGAGCAGGGGCGACGTTCACCGACCGGGCCTGCAAAGGCTTTGCTG
CGAGCGATTGCCAATGATCCGCAACATGTGCTGCAAGCACTTAACCGTTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|