Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
| Location | 562576..563213 | Replicon | chromosome |
| Accession | NZ_CP074392 | ||
| Organism | Agrobacterium salinitolerans strain DG3-1 | ||
Toxin (Protein)
| Gene name | graT | Uniprot ID | - |
| Locus tag | KHC17_RS02710 | Protein ID | WP_217003937.1 |
| Coordinates | 562932..563213 (-) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | graA | Uniprot ID | - |
| Locus tag | KHC17_RS02705 | Protein ID | WP_149148158.1 |
| Coordinates | 562576..562875 (-) | Length | 100 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHC17_RS02680 (KHC17_02680) | 557762..558490 | - | 729 | WP_217003934.1 | ABC transporter ATP-binding protein | - |
| KHC17_RS02685 (KHC17_02685) | 558487..559395 | - | 909 | WP_191217890.1 | branched-chain amino acid ABC transporter permease | - |
| KHC17_RS02690 (KHC17_02690) | 559392..560264 | - | 873 | WP_217003935.1 | branched-chain amino acid ABC transporter permease | - |
| KHC17_RS02695 (KHC17_02695) | 560335..561549 | - | 1215 | WP_217003936.1 | amino acid ABC transporter substrate-binding protein | - |
| KHC17_RS02700 (KHC17_02700) | 561684..562556 | + | 873 | WP_137411180.1 | helix-turn-helix domain-containing protein | - |
| KHC17_RS02705 (KHC17_02705) | 562576..562875 | - | 300 | WP_149148158.1 | HigA family addiction module antitoxin | Antitoxin |
| KHC17_RS02710 (KHC17_02710) | 562932..563213 | - | 282 | WP_217003937.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| KHC17_RS02715 (KHC17_02715) | 563292..564098 | - | 807 | WP_217003938.1 | ABC transporter ATP-binding protein | - |
| KHC17_RS02720 (KHC17_02720) | 564095..565135 | - | 1041 | WP_217003939.1 | iron chelate uptake ABC transporter family permease subunit | - |
| KHC17_RS02725 (KHC17_02725) | 565132..566175 | - | 1044 | WP_217003940.1 | iron ABC transporter permease | - |
| KHC17_RS02730 (KHC17_02730) | 566172..567182 | - | 1011 | WP_217003941.1 | iron-siderophore ABC transporter substrate-binding protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10643.07 Da Isoelectric Point: 8.0066
>T202010 WP_217003937.1 NZ_CP074392:c563213-562932 [Agrobacterium salinitolerans]
MIRSFKNKLTASIDDGSMKKGFPADLVRRAQQLLTILDAATTVEDFRSPPGNRLEKLSGDREGQYSIRINKQWRICFVWT
EAGPENVEITDYH
MIRSFKNKLTASIDDGSMKKGFPADLVRRAQQLLTILDAATTVEDFRSPPGNRLEKLSGDREGQYSIRINKQWRICFVWT
EAGPENVEITDYH
Download Length: 282 bp
>T202010 NZ_CP099260:77103-77678 [Klebsiella aerogenes]
ATGCGACATTCACCTTATCCGGTGATTTTAGATGCTTGTGTATTATATCCAGCACGGCTCAGGGATTTATTAATGCACTT
AGGGATCGCTGGACTTTATCAACCAAAATGGAGCCGCTTCATTCACGATGAATGGTGCAGGAATCTTCTTATAAATCGGC
CTGATATAGCACCTGAAGCGCTGCGTCGTACCGTTGATCTCATGAATGCAGCTTTACCGGATGCTAATGTAACGGGTTTT
GCAGGATTAATTAACGGACTAGTTTTACCCGACCCTGACGATCGGCATGTCCTTGCTGCGGCAATCAGAGCGAAGGCTGA
AATTATCGTTACGTTAAATCATAAAGACTTTCCAGCAGAATCATTGCTTCCATTTGAAATTGAAACACTTCATCCTGATG
TATTCATATCGGACCTGTTTGACCTTAATCATGCTCTGGCGTTGGAGGCGGTGAGAAGGCAGCGGCAGTCTCTCAAGCAT
CCTCCAATGACCGTCGATGAGTTCCTGGAGATGCTGCTAAAGCAGGGCTTGCCGATGACGGTAAAAGAGTTAGCCAATTA
CCAGTACGCCATATAG
ATGCGACATTCACCTTATCCGGTGATTTTAGATGCTTGTGTATTATATCCAGCACGGCTCAGGGATTTATTAATGCACTT
AGGGATCGCTGGACTTTATCAACCAAAATGGAGCCGCTTCATTCACGATGAATGGTGCAGGAATCTTCTTATAAATCGGC
CTGATATAGCACCTGAAGCGCTGCGTCGTACCGTTGATCTCATGAATGCAGCTTTACCGGATGCTAATGTAACGGGTTTT
GCAGGATTAATTAACGGACTAGTTTTACCCGACCCTGACGATCGGCATGTCCTTGCTGCGGCAATCAGAGCGAAGGCTGA
AATTATCGTTACGTTAAATCATAAAGACTTTCCAGCAGAATCATTGCTTCCATTTGAAATTGAAACACTTCATCCTGATG
TATTCATATCGGACCTGTTTGACCTTAATCATGCTCTGGCGTTGGAGGCGGTGAGAAGGCAGCGGCAGTCTCTCAAGCAT
CCTCCAATGACCGTCGATGAGTTCCTGGAGATGCTGCTAAAGCAGGGCTTGCCGATGACGGTAAAAGAGTTAGCCAATTA
CCAGTACGCCATATAG
Antitoxin
Download Length: 100 a.a. Molecular weight: 11016.85 Da Isoelectric Point: 8.5044
>AT202010 WP_149148158.1 NZ_CP074392:c562875-562576 [Agrobacterium salinitolerans]
MTISKSPPIHPGEILRELYLEPLGMSAYALAKHLNIPRTRIERIAGEKLGITADTALRLAKFFKTTPEYWLNLQNAFDIK
AAAARLEADLANIKELEAA
MTISKSPPIHPGEILRELYLEPLGMSAYALAKHLNIPRTRIERIAGEKLGITADTALRLAKFFKTTPEYWLNLQNAFDIK
AAAARLEADLANIKELEAA
Download Length: 300 bp
>AT202010 NZ_CP099260:76657-77103 [Klebsiella aerogenes]
ATGACTAAACTGAACCTTCCGAACCCGCTGGAGAGTGAACTTGCCCAGCGCGGGCAGCGTGAGCTGGCGGCATACCTTTC
TACTCATCTTAAAACGCAGCGTATTGCGATTGTGGGTGAAGATGACAAAACTCATACCATTGAGTTGCCAACCAGCGCTC
TGACTATGCTGATGGAGATCCTTGGGGAATTGGCTTGTGGCAACGCGGTGCAGATTGTTCCTGTTCATGCTGAACTCACC
ACCCAGGAAGCAGCGAATATCCTCAATGTTTCTCGTCCGCATATGGTTAAACTGCTGGAAGCGAGGAAGCTTCCATTTCA
TAAAACTGGACGCCATCGCCGGGTTCTGTTTGCCGATCTGATGGAGTATAAAAAACGTAGGGAACAGGAAAGCCTGGACG
CGATGCAAGCGCTGGCGGATCAGGCGCAGGACTTAGGGATGTATTAA
ATGACTAAACTGAACCTTCCGAACCCGCTGGAGAGTGAACTTGCCCAGCGCGGGCAGCGTGAGCTGGCGGCATACCTTTC
TACTCATCTTAAAACGCAGCGTATTGCGATTGTGGGTGAAGATGACAAAACTCATACCATTGAGTTGCCAACCAGCGCTC
TGACTATGCTGATGGAGATCCTTGGGGAATTGGCTTGTGGCAACGCGGTGCAGATTGTTCCTGTTCATGCTGAACTCACC
ACCCAGGAAGCAGCGAATATCCTCAATGTTTCTCGTCCGCATATGGTTAAACTGCTGGAAGCGAGGAAGCTTCCATTTCA
TAAAACTGGACGCCATCGCCGGGTTCTGTTTGCCGATCTGATGGAGTATAAAAAACGTAGGGAACAGGAAAGCCTGGACG
CGATGCAAGCGCTGGCGGATCAGGCGCAGGACTTAGGGATGTATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|