Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 4239662..4240416 Replicon chromosome
Accession NZ_CP074092
Organism Salmonella enterica subsp. enterica serovar Typhimurium strain SO_8752_Stm

Toxin (Protein)


Gene name higB Uniprot ID B5F003
Locus tag KFK83_RS20595 Protein ID WP_000558166.1
Coordinates 4240105..4240416 (-) Length 104 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag KFK83_RS20590 Protein ID WP_001259011.1
Coordinates 4239662..4240108 (-) Length 149 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KFK83_RS20560 (4234838) 4234838..4235734 + 897 WP_001520529.1 sugar kinase -
KFK83_RS20565 (4235768) 4235768..4236571 + 804 WP_000059693.1 DeoR/GlpR family DNA-binding transcription regulator -
KFK83_RS20570 (4236762) 4236762..4237361 + 600 WP_000965695.1 glucose-1-phosphatase -
KFK83_RS20575 (4237355) 4237355..4238227 + 873 WP_000921427.1 virulence factor BrkB family protein -
KFK83_RS20580 (4238224) 4238224..4238661 + 438 WP_000560974.1 D-aminoacyl-tRNA deacylase -
KFK83_RS20585 (4238706) 4238706..4239647 + 942 WP_001518251.1 fatty acid biosynthesis protein FabY -
KFK83_RS20590 (4239662) 4239662..4240108 - 447 WP_001259011.1 type II toxin-antitoxin system HigA family antitoxin Antitoxin
KFK83_RS20595 (4240105) 4240105..4240416 - 312 WP_000558166.1 type II toxin-antitoxin system HigB family toxin Toxin
KFK83_RS20600 (4240502) 4240502..4241431 - 930 WP_001127703.1 alpha/beta hydrolase -
KFK83_RS20605 (4241649) 4241649..4241960 + 312 WP_001159630.1 cytotoxic translational repressor of toxin-antitoxin stability system -
KFK83_RS20610 (4241961) 4241961..4242251 + 291 WP_000362050.1 DNA-binding transcriptional regulator -
KFK83_RS20615 (4242298) 4242298..4243227 - 930 WP_000027730.1 formate dehydrogenase accessory protein FdhE -
KFK83_RS20620 (4243224) 4243224..4243859 - 636 WP_000829025.1 formate dehydrogenase cytochrome b556 subunit -
KFK83_RS20625 (4243856) 4243856..4244758 - 903 WP_000331361.1 formate dehydrogenase subunit beta -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 104 a.a.        Molecular weight: 12432.40 Da        Isoelectric Point: 9.5334

>T201382 WP_000558166.1 NZ_CP074092:c4240416-4240105 [Salmonella enterica subsp. enterica serovar Typhimurium]
VHVISRKPFNEAMLMYPNHELALTELLNVLEKKTFTQPEEMKRYIPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRLHKI
FVKHIVSHAEYDKLTAYYRGNKE

Download         Length: 312 bp

>T201382 NZ_CP098349:83017-83415 [Klebsiella pneumoniae]
ATGCTGAAGTTTATGCTCGATACCAACATCTGCATTTTCACGATAAAGAACAAACCCGCCAGCGTCAGGGAGCGTTTTAA
CCTGAACCAGGGGAGAATGTGTATCAGTTCGGTCACCCTGATGGAGCTGATATATGGTGCAGAAAAAAGCCAGATGCCTG
AACGTAATCTCGCTGTGATCGAGGGATTTGTTTCCCGCATTGATGTTCTGGATTACGACGCTGCCGCAGCCACACACAGC
GGCCAGATAAGAGCAGAACTTGCCCGTCAGGGACGCCCTGTCGGGCCATTTGATCAAATGATCGCAGGTCATGCCCGCAG
TCGGGGACTGATTATTGTGACTAATAACACCCGGGAATTTGAACGTGTGGACGGTCTGAGAATTGAAGACTGGAGCTGA

Antitoxin


Download         Length: 149 a.a.        Molecular weight: 16734.08 Da        Isoelectric Point: 6.6451

>AT201382 WP_001259011.1 NZ_CP074092:c4240108-4239662 [Salmonella enterica subsp. enterica serovar Typhimurium]
MRTHRQMDATSAKKIVDTFSDAVKTVPLMGEDRNDNEYRRALALVEFLVDHDDLENPLFELLCARISEYEKHAPEFKALN
QHLEKTPPGVSVLRTLMDQYGLKAADLANELGSKSNVSNILNGRRALTVNHIKALTQRFKLPADAFIE

Download         Length: 447 bp

>AT201382 NZ_CP098349:82790-83017 [Klebsiella pneumoniae]
ATGGAAACCACCGTATTTTTCAGCAACCGCAGCCAGGCGGTCAGACTGCCAAAAGCGGTTGCATTGCCGGAAAACGTAAA
ACGCGTTGAAGTGATTGCTGTCGGACGAACCAGAATCATTACGCCAGCCGGAGAGACATGGGACGAATGGTTCGACGGAC
ACAACGTCAGCGCCGATTTTATGGATAACAGGGAACAGCCCGGCATGCAGGAAAGGGAGTCATTCTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A0R9ME90


Antitoxin

Source ID Structure

References