Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tsbAT/-
Location 1688352..1689154 Replicon chromosome
Accession NZ_CP073857
Organism Staphylococcus epidermidis strain B1272014

Toxin (Protein)


Gene name tsbT Uniprot ID Q5HN83
Locus tag KFV47_RS07735 Protein ID WP_002468490.1
Coordinates 1688352..1688531 (-) Length 60 a.a.

Antitoxin (Protein)


Gene name tsbA Uniprot ID Q5HN82
Locus tag KFV47_RS07740 Protein ID WP_002456349.1
Coordinates 1688555..1689154 (-) Length 200 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
KFV47_RS07715 (KFV47_07725) 1683746..1684879 - 1134 WP_001829819.1 GAF domain-containing sensor histidine kinase -
KFV47_RS07720 (KFV47_07730) 1685038..1685861 + 824 Protein_1534 RluA family pseudouridine synthase -
KFV47_RS07725 (KFV47_07735) 1686222..1687607 - 1386 WP_001829862.1 class II fumarate hydratase -
KFV47_RS07730 (KFV47_07740) 1687792..1688196 - 405 WP_001829818.1 hypothetical protein -
KFV47_RS07735 (KFV47_07745) 1688352..1688531 - 180 WP_002468490.1 SAS053 family protein Toxin
KFV47_RS07740 (KFV47_07750) 1688555..1689154 - 600 WP_002456349.1 glucosamine-6-phosphate isomerase Antitoxin
KFV47_RS07745 (KFV47_07755) 1689312..1689782 - 471 WP_001829836.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
KFV47_RS07750 (KFV47_07760) 1689779..1690909 - 1131 WP_001829814.1 tRNA epoxyqueuosine(34) reductase QueG -
KFV47_RS07755 (KFV47_07765) 1691119..1691274 - 156 WP_001829854.1 hypothetical protein -
KFV47_RS07760 (KFV47_07770) 1691771..1692493 - 723 WP_001829838.1 amino acid ABC transporter ATP-binding protein -
KFV47_RS07765 (KFV47_07775) 1692486..1693943 - 1458 WP_002440300.1 ABC transporter substrate-binding protein/permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
flank IS/Tn - - 1691119..1691274 155


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Glucosamine-6-phosphate isomerase

(130-195)


Sequences

Toxin        


Download         Length: 60 a.a.        Molecular weight: 6963.56 Da        Isoelectric Point: 4.3016

>T200406 WP_002468490.1 NZ_CP073857:c1688531-1688352 [Staphylococcus epidermidis]
MANKKDSKLNYHEEENAMVTDLDDLKELGKEMEQISQENDEEKLNQSHDNEVRSDLKKQ

Download         Length: 180 bp

>T200406 NZ_CP097841:c131110-130712 [Shigella flexneri]
ATGCTGAAGTTTATTCTCGATACCAACATCTGCATTTTTACGATAAAGAACAAACCCGCCAGCGTCAGGGAGCGTTTTAA
CCTGAACCAGGGGAAAATGTGTATCAGTTCGGTCACCCTGATGGAGCTGATATATGGTGCAGAAAAAAGCCAGATGCCTG
AACGTAATCTCGCTGTGATCGAGGGATTTGTTTCCCGCATTGATGTTCTGGATTACGACGCTGCTGCAGCCACACACACC
GGCCAGATAAGAGCAGAACTTGCCCGTCAGGGACGCCCTGTCGGGCCATTTGATCAAATGATCGCAGGTCATGCCCGCAG
TCGGGGGCTGATTATTGTGACTAATAACACCCGGGAATTTGAACGTGTGGGCGGCCTGAGAACTGAAGACTGGAGCTGA

Antitoxin


Download         Length: 200 a.a.        Molecular weight: 22709.62 Da        Isoelectric Point: 4.9942

>AT200406 WP_002456349.1 NZ_CP073857:c1689154-1688555 [Staphylococcus epidermidis]
MAMNFKVFDNSEKVAEYTADILRKQFNNNPTTIAGFHLSKEHAPVFDELKKNVENHTVDFSQINILDYDDNHSYYEALGV
PTGQIYSISYENDAIDFISDKIKTKENKGKLTMQVLTIDENGKLDISVRQGLMEAREIFLVITGANKRDMVEKLYRENGK
TSFEPSDLKAHRMVNVILDKEAAAGLPEDVKEYFTARFA

Download         Length: 600 bp

>AT200406 NZ_CP097841:c131337-131110 [Shigella flexneri]
ATGGAAACCACCGTATTTCTCAGCAACCGCAGCCAGGCGGTCAGACTGCCAAAAGCGGTTGCATTGCCGGAAAACGTAAA
ACGCGTTGAAGTAATTGCTGTCGGACGAACCAGAATCATTACGCCAGCCGGAGAGACATGGGACGAATGGTTCGACGGAC
ACAGCGTCAGCACCGATTTTATGGATAACAGGGAACAGCCCGGCATGCAGGAAAGGGAGTCATTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2G7HY44

Antitoxin

Source ID Structure
AlphaFold DB A0A5E9LUD0

References