Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
| Location | 2461348..2461865 | Replicon | chromosome |
| Accession | NZ_CP072116 | ||
| Organism | Staphylococcus aureus strain TCH32929 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | A0A3A3ATA4 |
| Locus tag | J6L63_RS12230 | Protein ID | WP_000113265.1 |
| Coordinates | 2461599..2461865 (+) | Length | 89 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | T1YB60 |
| Locus tag | J6L63_RS12225 | Protein ID | WP_000584499.1 |
| Coordinates | 2461348..2461599 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J6L63_RS12195 (2457046) | 2457046..2457765 | + | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
| J6L63_RS12200 (2457762) | 2457762..2458493 | + | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
| J6L63_RS12205 (2458590) | 2458590..2459840 | - | 1251 | WP_001012225.1 | FemA/FemB family glycyltransferase FmhA | - |
| J6L63_RS12210 (2460095) | 2460095..2460457 | + | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
| J6L63_RS12215 (2460476) | 2460476..2461075 | + | 600 | WP_000162810.1 | DsbA family protein | - |
| J6L63_RS12220 (2461103) | 2461103..2461183 | + | 81 | WP_223197974.1 | hypothetical protein | - |
| J6L63_RS12225 (2461348) | 2461348..2461599 | + | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| J6L63_RS12230 (2461599) | 2461599..2461865 | + | 267 | WP_000113265.1 | Txe/YoeB family addiction module toxin | Toxin |
| J6L63_RS12235 (2461900) | 2461900..2461971 | + | 72 | Protein_2381 | hypothetical protein | - |
| J6L63_RS12240 (2462160) | 2462160..2463707 | + | 1548 | WP_000727772.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
| J6L63_RS12245 (2463893) | 2463893..2464360 | + | 468 | WP_000153347.1 | SRPBCC domain-containing protein | - |
| J6L63_RS12250 (2464444) | 2464444..2464626 | + | 183 | WP_000230292.1 | hypothetical protein | - |
| J6L63_RS12255 (2464843) | 2464843..2465667 | + | 825 | WP_000572038.1 | formate/nitrite transporter family protein | - |
| J6L63_RS12260 (2465901) | 2465901..2466437 | + | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10436.96 Da Isoelectric Point: 10.0573
>T197318 WP_000113265.1 NZ_CP072116:2461599-2461865 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T197318 NZ_CP096016:c2616136-2615873 [Alkalimarinus coralli]
ATGTATAATTTTGAATTTGACCATAAAAAGAGCAATTCAAATCTAGACAAACATGGTATTGATTTCAATGAGGCTCAGTC
CCTATGGGGTGATCCAGACCTTATAGAAATCCAAGCCAAGTCAGAAGATGAGCCTCGCTCCTTAGTAATAGGCCGTATCG
GTGAAAAACACTGGTCGGCAGTTATTACTTGTCGGAAAGAAAGTATCCGAATAATTTCGGTGAGGCGTTCTCGTAAAACT
GAGGTAGCACTGTATGAAAGCTAA
ATGTATAATTTTGAATTTGACCATAAAAAGAGCAATTCAAATCTAGACAAACATGGTATTGATTTCAATGAGGCTCAGTC
CCTATGGGGTGATCCAGACCTTATAGAAATCCAAGCCAAGTCAGAAGATGAGCCTCGCTCCTTAGTAATAGGCCGTATCG
GTGAAAAACACTGGTCGGCAGTTATTACTTGTCGGAAAGAAAGTATCCGAATAATTTCGGTGAGGCGTTCTCGTAAAACT
GAGGTAGCACTGTATGAAAGCTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT197318 WP_000584499.1 NZ_CP072116:2461348-2461599 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT197318 NZ_CP096016:c2615883-2615632 [Alkalimarinus coralli]
ATGAAAGCTAAAGACTTCGACAAAAAGTTCGATAATAACGAAGATATTATAGATGATCTTGATTTGTCTTCCATTAAGCG
TCCTAACCAAGCTCAGAAAAGAGTAAATGTAGACTTTCCTACTTGGATGATCGATTCCTTAGATAAGGAAGCAAATCGAG
TTGGCGTAACACGCCAATCAATTATCAAAGTCTGGCTAGCGGAGAAGCTGGAAGAACAAGCAGCTAACAAGGCGTTGCAC
CGAACTCGCTAA
ATGAAAGCTAAAGACTTCGACAAAAAGTTCGATAATAACGAAGATATTATAGATGATCTTGATTTGTCTTCCATTAAGCG
TCCTAACCAAGCTCAGAAAAGAGTAAATGTAGACTTTCCTACTTGGATGATCGATTCCTTAGATAAGGAAGCAAATCGAG
TTGGCGTAACACGCCAATCAATTATCAAAGTCTGGCTAGCGGAGAAGCTGGAAGAACAAGCAGCTAACAAGGCGTTGCAC
CGAACTCGCTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|