Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 245960..246501 Replicon chromosome
Accession NZ_CP072054
Organism Escherichia coli strain K1508

Toxin (Protein)


Gene name yafQ Uniprot ID Q47149
Locus tag J5N95_RS01140 Protein ID WP_000615983.1
Coordinates 245960..246238 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID Q47150
Locus tag J5N95_RS01145 Protein ID WP_000729703.1
Coordinates 246241..246501 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
J5N95_RS01125 (243542) 243542..244120 + 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -
J5N95_RS01130 (244326) 244326..245093 + 768 WP_000333380.1 class II glutamine amidotransferase -
J5N95_RS01135 (245064) 245064..245804 - 741 WP_001225679.1 peptidoglycan meso-diaminopimelic acid protein amidase -
J5N95_RS01140 (245960) 245960..246238 - 279 WP_000615983.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
J5N95_RS01145 (246241) 246241..246501 - 261 WP_000729703.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
J5N95_RS01150 (246711) 246711..247460 + 750 WP_000056849.1 C40 family peptidase -
J5N95_RS01155 (247636) 247636..248133 + 498 WP_000006255.1 REP-associated tyrosine transposase RayT -
J5N95_RS01160 (248357) 248357..250069 - 1713 Protein_226 flagellar biosynthesis protein FlhA -
J5N95_RS01165 (250041) 250041..250826 + 786 WP_000207552.1 putative lateral flagellar export/assembly protein LafU -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(4-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10846.62 Da        Isoelectric Point: 9.9941

>T197243 WP_000615983.1 NZ_CP072054:c246238-245960 [Escherichia coli]
MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLR
FERTGTHAALFG

Download         Length: 279 bp

>T197243 NZ_CP095843:c2658336-2658229 [Escherichia fergusonii]
ATGACGCTCGCAGAACTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9405.80 Da        Isoelectric Point: 5.0758

>AT197243 WP_000729703.1 NZ_CP072054:c246501-246241 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGIDVHKAKDADDL
FDKLGI

Download         Length: 261 bp

>AT197243 NZ_CP095843:2658384-2658450 [Escherichia fergusonii]
GGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4Q2U

Antitoxin

Source ID Structure
PDB 4Q2U
AlphaFold DB A0A5F1F716

References